View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1148_high_42 (Length: 328)

Name: NF1148_high_42
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1148_high_42
NF1148_high_42
[»] chr4 (1 HSPs)
chr4 (30-320)||(51034937-51035227)
[»] chr7 (2 HSPs)
chr7 (154-237)||(10208427-10208510)
chr7 (30-75)||(10208624-10208669)
[»] chr3 (2 HSPs)
chr3 (154-237)||(48118336-48118419)
chr3 (30-75)||(48118182-48118227)
[»] chr6 (2 HSPs)
chr6 (30-70)||(18700008-18700048)
chr6 (30-75)||(8891063-8891108)
[»] chr5 (2 HSPs)
chr5 (160-244)||(40883261-40883345)
chr5 (30-75)||(40883413-40883458)
[»] chr1 (3 HSPs)
chr1 (157-237)||(33357918-33357998)
chr1 (30-75)||(33358295-33358340)
chr1 (272-320)||(33357817-33357865)
[»] scaffold0164 (1 HSPs)
scaffold0164 (30-64)||(12205-12239)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 30 - 320
Target Start/End: Complemental strand, 51035227 - 51034937
Alignment:
Q  30 tttctaattccactctttatgatcatcatttgtttcattttcatttcatggttctcacaatgttccatgannnnnnnnn-cttctcaactgtctttattg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||    
T  51035227 tttctaattccactctttatgatcatcatttgtttcattttcatttcatggttctcacaatgttccatgattttttttttcttctcaactgtctttattg 51035128  T
Q  129 ttgttctatcttcnnnnnnnnnnnngttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcg 228  Q
    ||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51035127 ttgttctatctt-ttttttttttttgttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcg 51035029  T
Q  229 gttacacctttaatctattggtttcaaaagtaactattatctgtctctcataatataaacctctttttcattcccc-ttttgttcttcatctc 320  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||    
T  51035028 gttaca-ctttaatctattggtttcaaaagtaactattatctgtctctcatgatataaacctctttttcattcccctttttgttcttcttctc 51034937  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 10208510 - 10208427
Alignment:
Q  154 gttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacacct 237  Q
    |||||||||||||||| |||||||||   ||| ||||| ||||||||| ||||| | ||||||| |||||||||||||||||||    
T  10208510 gttacactttattgttgttctctaaagcaatgattgctattaaaaattgagaatcaaacatttgcgatttgagcggttacacct 10208427  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 10208669 - 10208624
Alignment:
Q  30 tttctaattccactctttatgatcatcatttgtttcattttcattt 75  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  10208669 tttctaattccactcattacgatcatcatttgtttcatttttattt 10208624  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 48118336 - 48118419
Alignment:
Q  154 gttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacacct 237  Q
    |||| ||||||||||| |||||||||   ||| ||||| ||||||||| ||||||| ||||||||||| |||||||||||||||    
T  48118336 gttatactttattgttgttctctaaagcaatgattgctattaaaaattgagaatgaaacatttgtgatctgagcggttacacct 48118419  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 48118182 - 48118227
Alignment:
Q  30 tttctaattccactctttatgatcatcatttgtttcattttcattt 75  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  48118182 tttctaattccactcattacgatcatcatttgtttcatttttattt 48118227  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 18700048 - 18700008
Alignment:
Q  30 tttctaattccactctttatgatcatcatttgtttcatttt 70  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18700048 tttctaattccactctttatgatcatcatttgtttcatttt 18700008  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 8891063 - 8891108
Alignment:
Q  30 tttctaattccactctttatgatcatcatttgtttcattttcattt 75  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  8891063 tttctaattccactctttatgatcatcatttgtttaatttttattt 8891108  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 40883345 - 40883261
Alignment:
Q  160 ctttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacacctttaatct 244  Q
    |||||||||| |||||||||   ||||||||| ||||||||| ||||||  |||| |||||||||||| |||||| |||||||||    
T  40883345 ctttattgttgttctctaaagcaatggttgcttttaaaaattgagaatggaacatctgtgatttgagcagttacaactttaatct 40883261  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 40883458 - 40883413
Alignment:
Q  30 tttctaattccactctttatgatcatcatttgtttcattttcattt 75  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  40883458 tttctaattccactctttatgatcatcatttgtttaatttttattt 40883413  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 33357998 - 33357918
Alignment:
Q  157 acactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacacct 237  Q
    ||||||||||||||||||| |||   ||| |||||| |||||||| ||||||| |||| | ||||||||||||||||||||    
T  33357998 acactttattgtttttctcgaaagcaatgattgctgataaaaattgagaatgaaacatctttgatttgagcggttacacct 33357918  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 33358340 - 33358295
Alignment:
Q  30 tttctaattccactctttatgatcatcatttgtttcattttcattt 75  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  33358340 tttctaattccactctttacgatcatcatttgtttcatttttattt 33358295  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 33357865 - 33357817
Alignment:
Q  272 tctctcataatataaacctctttttcattccccttttgttcttcatctc 320  Q
    ||||||| ||| |||||||||||||||||| |||||| |||||| ||||    
T  33357865 tctctcacaatgtaaacctctttttcattcaccttttattcttcttctc 33357817  T

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Target: scaffold0164 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 12239 - 12205
Alignment:
Q  30 tttctaattccactctttatgatcatcatttgttt 64  Q
    |||||||||||||||||||||||||||||||||||    
T  12239 tttctaattccactctttatgatcatcatttgttt 12205  T

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