View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1148_high_46 (Length: 320)
Name: NF1148_high_46
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_high_46 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 150 - 310
Target Start/End: Complemental strand, 43550360 - 43550200
Alignment:
| Q |
150 |
tgggagcatatcttatgcatcttggtagttccataataaattttttattgttcaattacaggaatttaaaggtttaataggtactaccattctaccatca |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43550360 |
tgggagcatatcttatgcatcttggtagttccataataaatttttgatttttcaattacaggaatttaaaggtttaataggtactaccattctaccatca |
43550261 |
T |
|
| Q |
250 |
tgtatccaaaaattaagcttagaacaaaacaaaatcacagtgatgtctcactatacatatt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43550260 |
tgtatccaaaaattaagcttagaacaaaacaaaatcacagtgatgtctcactatgcatatt |
43550200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 17750050 - 17749970
Alignment:
| Q |
207 |
acaggaatttaaaggtttaataggtactaccattctaccatcatgtatccaaaaattaagcttagaacaaaacaaaatcac |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17750050 |
acaggaatttaaaggtttaataggtactaccattctactatcatgtatcctaaaattaagcttagaacaaaacaaaatcac |
17749970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 17738209 - 17738253
Alignment:
| Q |
150 |
tgggagcatatcttatgcatcttggtagttccataataaattttt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17738209 |
tgggagcatatcttatgcatcttggtagtcccataataaattttt |
17738253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 50902601 - 50902560
Alignment:
| Q |
216 |
taaaggtttaataggtactaccattctaccatcatgtatcca |
257 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
50902601 |
taaaggtttaataggtacaaccattctaccaccatgtatcca |
50902560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 50897950 - 50897896
Alignment:
| Q |
153 |
gagcatatcttatgcatcttggtagttccataataaattttttattgttcaatta |
207 |
Q |
| |
|
|||||||||||||||||| |||| || || |||||||||||| ||||||||||| |
|
|
| T |
50897950 |
gagcatatcttatgcatcatggtggtgccttaataaatttttgcttgttcaatta |
50897896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 50897893 - 50897844
Alignment:
| Q |
235 |
accattctaccatcatgtatccaaaaat-taagcttagaacaaaacaaaa |
283 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | |||| ||||| |
|
|
| T |
50897893 |
accattctaccatcatgtatccaaaaatataagcttatagcaaatcaaaa |
50897844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 2890676 - 2890595
Alignment:
| Q |
5 |
caagatcctcatttctagacaagaccaacaagagcttgtcatctttaggacttacatcccaatgtgagtcatccaaaataca |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
2890676 |
caagatcctcatttctagacaagaccaacaagagcttgtcatctttagaacttacatcccaatgtgaatcatccaaaataca |
2890595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University