View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_high_47 (Length: 320)
Name: NF1148_high_47
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 28 - 308
Target Start/End: Complemental strand, 41876322 - 41876042
Alignment:
| Q |
28 |
ggcagctaatgctactcccgatgccataccactgcctacaattttcattttgttggaaaatcgagatgagaatactaaaatttatgaaaattttaaaaca |
127 |
Q |
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| T |
41876322 |
ggcagctaatgctactcccgatgccataccaccgcctacaattttcattttgttggaaaatcgagaagagaatactaaaatttatgaaaattttaaaaca |
41876223 |
T |
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| Q |
128 |
tttggttgatggattaacataaaaataagaacaaaccacttataggtactacaagagtatcaatctgaggggcttgttccaaaagctccaaggatatggt |
227 |
Q |
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| T |
41876222 |
tttggttgatggattaacataaaaatgagaacaaaccacttataggtactacaagagtatcaatctgaggggcttgttccaaaagctccaaggatatggt |
41876123 |
T |
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| Q |
228 |
accttggccactgcaagatcaactaaacatgtcaaagagcaatgcttagcaaaagcaagtcacagttccctataacatatt |
308 |
Q |
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| T |
41876122 |
accttggccactgcaagatcaactaaacatgtcaaagagcaatgcttagcaaaagcaagtcacagttccctataacatatt |
41876042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 28 - 268
Target Start/End: Original strand, 40867744 - 40867984
Alignment:
| Q |
28 |
ggcagctaatgctactcccgatgccataccactgcctacaattttcattttgttggaaaatcgagatgagaatactaaaatttatgaaaattttaaaaca |
127 |
Q |
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| T |
40867744 |
ggcagccaatgctactcctgatatcaaaccacctcctgcagttttcattt-gttggaaaatcaagaaggggataccaaaatcaatgcaaattttgaaaca |
40867842 |
T |
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| Q |
128 |
ttt-ggttgatggattaacataaaaataagaacaaaccacttataggtactacaagagtatcaatctgaggggcttgttccaaaagctccaaggatatgg |
226 |
Q |
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| T |
40867843 |
ttttggatgatggtttgacatcaaaaagcaaacaaaccacttattggtaccacaagtgtatctagttgaggggcttgttccagaagctccaaggatatgg |
40867942 |
T |
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| Q |
227 |
taccttggccactgcaagatcaactaaacatgtcaaagagca |
268 |
Q |
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| T |
40867943 |
taccctggccactgcaagatcaaacaaacatgtcaaagagca |
40867984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 84 - 269
Target Start/End: Original strand, 24800505 - 24800695
Alignment:
| Q |
84 |
aaaatcgagatgagaatactaaaatttatgaaaattttaaaacatttggttgatggattaacataaaaataaga--acaaaccacttataggtactacaa |
181 |
Q |
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| T |
24800505 |
aaaatcgataagaggatactaaattatatgcaaattgtgaaacattttgatgatggattgacgtaaaaaagagagaacaaaccacttattggtactacaa |
24800604 |
T |
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| Q |
182 |
gagtatcaatctgaggggcttgttccaaaagctccaaggatatggtaccttggccactgcaagatcaac---taaacatgtcaaagagcaa |
269 |
Q |
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| T |
24800605 |
gtgtatcgatttgagggatttgttcaagaaactccaaggatatggtaccttggccactataagatcaaccagcaaacatgtcaaagagcaa |
24800695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 84 - 269
Target Start/End: Original strand, 24817581 - 24817771
Alignment:
| Q |
84 |
aaaatcgagatgagaatactaaaatttatgaaaattttaaaacatttggttgatggattaacataaaaataaga--acaaaccacttataggtactacaa |
181 |
Q |
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|||||||| | ||| |||||||| | |||| ||||| | |||||||| | ||||||||| || |||||| ||| ||||||||||||| |||||||||| |
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| T |
24817581 |
aaaatcgataagaggatactaaattatatgcaaattgtgaaacattttgatgatggattgacgtaaaaaagagagaacaaaccacttattggtactacaa |
24817680 |
T |
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| Q |
182 |
gagtatcaatctgaggggcttgttccaaaagctccaaggatatggtaccttggccactgcaagatcaac---taaacatgtcaaagagcaa |
269 |
Q |
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| T |
24817681 |
gtgtatcgatttgagggatttgttcaagaaactccaaggatatggtaccttggccactataagatcaaccagcaaacatgtcaaagagcaa |
24817771 |
T |
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