View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_high_50 (Length: 301)
Name: NF1148_high_50
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 41806543 - 41806808
Alignment:
| Q |
5 |
gagaagcaaagggagaaattcaaaacttgataaactataaacttaagaaaattttaaagtattgtaataatcact-cacattgtacaccttaattcatag |
103 |
Q |
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| T |
41806543 |
gagaaacaatgggagaaattcaaaacttgataaactataaacttaagaaaattttaaagtattgtaat---cactgcacattgtacaccttaattcatag |
41806639 |
T |
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| Q |
104 |
attttataccaatcacttatcactccagcctaaggcctaaaggtccttgatcgttcatattttgattattatgaacatattcaagatccaattgttactc |
203 |
Q |
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| T |
41806640 |
attttataccaatcacttatcactccagcctaaggcctaaaggtccttgatcgttcatattttgattattatgaacatattcaagatccaattattactg |
41806739 |
T |
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| Q |
204 |
gaaaagcttttgatcnnnnnnnnnctatgacaaatgctatcccatattccaatcatcaacacacgatatt |
273 |
Q |
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| T |
41806740 |
gaaaagcttttgat-tttttttttctatgacaaatgctatcccatattccaatcatcaacacacgatatt |
41806808 |
T |
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