View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_high_60 (Length: 262)
Name: NF1148_high_60
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_high_60 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 29 - 262
Target Start/End: Original strand, 11294688 - 11294921
Alignment:
| Q |
29 |
aattagatttttatacattttggattaggactaatatcannnnnnnnggcattatggaatcgttgtagtgatcagaagaggaacaatagcaatgtatgat |
128 |
Q |
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| T |
11294688 |
aattagatttttatacattttggattaggactaatatcatttattttggcattatggaatcgttgtagtgatcagaagaggaacaatagcaatgtatgat |
11294787 |
T |
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| Q |
129 |
tatggtatttttaattgggtacactatggtcaactattacctccagattatgacctttccaaaattccaaatgatttgcctctttttcttggaattggaa |
228 |
Q |
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| T |
11294788 |
tatggtatttttaattgggtacactatggtcaactattacctccagattatgacttttccaaaattccaaatgatttgcctctttttcttggaattggaa |
11294887 |
T |
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| Q |
229 |
agttagatatgctatctgatgaagaagatgtgaa |
262 |
Q |
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| T |
11294888 |
agttagatatgctatctgatgaagaagatgtgaa |
11294921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 29 - 259
Target Start/End: Original strand, 11300644 - 11300872
Alignment:
| Q |
29 |
aattagatttttatacattttggattaggactaatatcannnnnnnnggcattatggaatcgttgtagtgatcagaagaggaacaatagcaatgtatgat |
128 |
Q |
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| T |
11300644 |
aattagatttttatacattttggattaggactaatagaatttttt--ggcattatggaattattgtagtgatcagaaaaggaacaatagcaaagtatgat |
11300741 |
T |
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| Q |
129 |
tatggtatttttaattgggtacactatggtcaactattacctccagattatgacctttccaaaattccaaatgatttgcctctttttcttggaattggaa |
228 |
Q |
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| T |
11300742 |
tatggtatttttaattggcaacactatggtcaactattacctccagattatgacctttctcaaattccaaatgatttgcctctttttcttggaattggaa |
11300841 |
T |
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| Q |
229 |
agttagatatgctatctgatgaagaagatgt |
259 |
Q |
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| T |
11300842 |
agttagatatgctatctgatgaagaagatgt |
11300872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 30911959 - 30912015
Alignment:
| Q |
78 |
cattatggaatcgttgtagtgatcagaagaggaacaatagcaatgtatgattatggt |
134 |
Q |
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| T |
30911959 |
cattatggaatcggtgtagtgattagaacagacacaatagcaaggtatgattatggt |
30912015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 30905570 - 30905683
Alignment:
| Q |
149 |
acactatggtcaactattacctccagattatgacctttccaaaattccaaatgatttgcctctttttcttggaattggaaagttagatatgctatctgat |
248 |
Q |
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|||||||||||||| | | |||||| ||| ||||| ||||||| || |||||||| || |||||||| ||| |||| | |||||||||||||||| |
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| T |
30905570 |
acactatggtcaacgagttcctccaacttacgacctgaccaaaatcccgaatgatttcccactttttctcggatatggagggcaagatatgctatctgat |
30905669 |
T |
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| Q |
249 |
gaagaagatgtgaa |
262 |
Q |
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| T |
30905670 |
gtacaagatgtgaa |
30905683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 30911915 - 30911944
Alignment:
| Q |
35 |
atttttatacattttggattaggactaata |
64 |
Q |
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| T |
30911915 |
atttttatacattttggattaggactaata |
30911944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 30912093 - 30912146
Alignment:
| Q |
209 |
tctttttcttggaattggaaagttagatatgctatctgatgaagaagatgtgaa |
262 |
Q |
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||||||||| ||||| |||| ||||||||||||| |||||| ||||||||||| |
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| T |
30912093 |
tctttttctcggaatgggaaggttagatatgctagctgatgttgaagatgtgaa |
30912146 |
T |
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