View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_13 (Length: 506)
Name: NF1148_low_13
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 30 - 430
Target Start/End: Original strand, 16438802 - 16439202
Alignment:
| Q |
30 |
atatccccctattatattttataggaatcttcattaaatggcttaatcatttaatttgaagctatcaagaggaaggatattaagcttaaagtttgttaga |
129 |
Q |
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| T |
16438802 |
atatccccctattatattttataggaatcttcattaaatggcttaatcatttagtttgaagctatcaagaggaaggatattaagcttaaagtttgttaga |
16438901 |
T |
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| Q |
130 |
gtattttagcttttaagtatagtaattagtttgctaatctcttgcagggagaaacagagttaataatatttgtttgactagaatcatatgcaattgtttg |
229 |
Q |
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| T |
16438902 |
gtattttagcttttaagtat-gtaattagtttgctaatctcttgcagggagaaacatagttaataatatttgtttgactagaatcatatgcaattgtttc |
16439000 |
T |
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| Q |
230 |
actgaa-gatggtaaacaatctacagcaacaatatgtgaaatacaatttggagttcctttcattcaaatcgaatcatgattaagaaaaaataatttagat |
328 |
Q |
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| T |
16439001 |
actgaaagatggtaaacaatctacagcaacaatatgtgaaatacaatttggagttcctttcattcaaatcgaatcatgattaataaaaaataatttagat |
16439100 |
T |
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| Q |
329 |
aagaaataagtaaattgatttgcatttctaagaatgataactataaataattccataattttactggtcaaagttgtgttgagtaaatcactaatgtgat |
428 |
Q |
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| T |
16439101 |
aagaaataagtaaattgatttgcatttctaagaatgataactataaataattccataattttactggtcaaagttgtgttgagtaaatcactaatgtgat |
16439200 |
T |
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| Q |
429 |
at |
430 |
Q |
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| T |
16439201 |
at |
16439202 |
T |
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