View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1148_low_15 (Length: 501)

Name: NF1148_low_15
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1148_low_15
NF1148_low_15
[»] chr1 (4 HSPs)
chr1 (30-501)||(18344920-18345391)
chr1 (32-477)||(18339786-18340231)
chr1 (224-432)||(18303657-18303865)
chr1 (38-124)||(18303480-18303566)


Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 30 - 501
Target Start/End: Complemental strand, 18345391 - 18344920
Alignment:
Q  30 ccctcttagatgacccactgaaccaatactttgcacttatctcccaacgttgtattccgctcttctcatttcaattcatttataactacctttttaaaaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18345391 ccctcttagatgacccactgaaccaatactttgcacttatctcccaacgttgtattccactcttctcatttcaattcatttataactacctttttaaaaa 18345292  T
Q  130 tcaactaaaatcatttgcaaattcgtctgaatttaacctactataccctagctatattgagattctctcagaggcagaaaatctcaatatacgatataat 229  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18345291 tcaactaaaatcatttgcaaattcgtctgaatttaacctactgtaccctagctatattgagattctctcagaggcagaaaatctcaatatacggtataat 18345192  T
Q  230 gctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatgttgtgt 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18345191 gctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaaggttgtgt 18345092  T
Q  330 tgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttacccagaggagcattatttttcgactcttctatcaatgga 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18345091 tgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttatccagaggagcattatttttcgactcttctatcaatgga 18344992  T
Q  430 ggatttgaaggggtatactggttttacactgactagagttaattggaccggtgctgtctctgctcctccaca 501  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  18344991 ggatttgaaggggtgtactggttttacactgactagagttaattggaccggtgctgtctatggtcatccaca 18344920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 32 - 477
Target Start/End: Complemental strand, 18340231 - 18339786
Alignment:
Q  32 ctcttagatgacccactgaaccaatactttgcacttatctcccaacgttgtattccgctcttctcatttcaattcatttataactacctttttaaaaatc 131  Q
    ||||||||||| || || |||||||||||||| ||  | || ||||  ||| |||||||||| || |||| |||| ||||||||||||||||||||||||    
T  18340231 ctcttagatgatccgcttaaccaatactttgccctagtttctcaacactgtgttccgctcttgtcgtttcgattcgtttataactacctttttaaaaatc 18340132  T
Q  132 aactaaaatcatttgcaaattcgtctgaatttaacctactataccctagctatattgagattctctcagaggcagaaaatctcaatatacgatataatgc 231  Q
    |  |||  || || || | ||  ||||| |||||| | || |||||||||| ||||||||||||||| ||||     |||||| |    || ||||| ||    
T  18340131 agttaatgtcgttagcgagtttctctgactttaacttgctttaccctagctttattgagattctctctgaggatccgaatctctacgagcgttataacgc 18340032  T
Q  232 tcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatgttgtgttg 331  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||  |||| ||| |||| |||||| ||    
T  18340031 tcgtggagagaatgttatgttgccggaggttccatttgaggattttcgggttggttcgcagttttttatcttgaataggaagcatgcaaaggttgtggtg 18339932  T
Q  332 agagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttacccagaggagcattatttttcgactcttctatcaatggagg 431  Q
    |||||| | ||||||||||| ||||||| |||||| |||  ||||  | ||| |||||| ||||| |||||||||||| | |||||| | || |||||||    
T  18339931 agagattataagctatggaagaagtttcggattccttgtgtaaatttggattcttgttatccagaagagcattattttcccactcttttgtctatggagg 18339832  T
Q  432 atttgaaggggtatactggttttacactgactagagttaattggac 477  Q
    || |||| |||| |||||||||||||||||| ||||||||||||||    
T  18339831 atctgaatgggtgtactggttttacactgacgagagttaattggac 18339786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 224 - 432
Target Start/End: Original strand, 18303657 - 18303865
Alignment:
Q  224 tataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatg 323  Q
    ||||||||||||||| || |||||||||||||||||||| ||||  ||||||||||    || || ||||| |||||| |||||||||||||| |||| |    
T  18303657 tataatgctcgtggaaaggatgtaatgatgccggaggtttcattcaaggattttcgcaaaggctcgcaattctttatcctgaaccggaaacatgcaaagg 18303756  T
Q  324 ttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttacccagaggagcattatttttcgactcttctatc 423  Q
    ||||  || ||||||||||| | ||||| ||||||| ||||||||||| | ||| |||||  |||||||| || |||||||| ||| |||||||||||||    
T  18303757 ttgttctgcgagatcaaaagttgtggaagaagtttcggattccatgtatagatacgtattcctgttacccggaagagcattactttccgactcttctatc 18303856  T
Q  424 aatggagga 432  Q
     ||||||||    
T  18303857 gatggagga 18303865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 18303480 - 18303566
Alignment:
Q  38 gatgacccactgaaccaatactttgcactta-tctcccaacgttgtattccgctcttctcatttcaattcatttataactaccttttt 124  Q
    ||||||||||  |||||||||||||| |||| ||||||||| ||||||||| |||||||| |||| |||  ||||||||| |||||||    
T  18303480 gatgacccacataaccaatactttgc-cttagtctcccaacattgtattccactcttctcgtttcgatttgtttataactcccttttt 18303566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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