View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1148_low_18 (Length: 478)
Name: NF1148_low_18
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 60 - 374
Target Start/End: Original strand, 2879068 - 2879382
Alignment:
| Q |
60 |
cataggacaaacctctggagggtattcatatgctgctctcgcatatgaccctgcagaatcttggtttttcaagattgcgcgttttcagggtcttcgtcat |
159 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2879068 |
cataggacaaacctctggtgggtattcatatgctgctctggcatatgaccctgcagaatcttggtttttcaagattgtgcgttttcagggtcttcgtcat |
2879167 |
T |
|
| Q |
160 |
gtgaacattttctcctccgtgactggtaattggactacattgaatattagtttgccagaatacatttacgagtctgattggatnnnnnnntcaatttatt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
2879168 |
gtgaacattttctcctccgtgactggtaattggacgacattgaatattagtttgccagattacatttacgagtctgattggataaaaaaatcaatttatt |
2879267 |
T |
|
| Q |
260 |
ttaaagggtctatttatcggctcaccaaatcggggtatttagtgaaaattaaagttgatcctcaggagaatgtttcggatcaagctgaggtaataacact |
359 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2879268 |
ttaaagggtctatttatcggctcaccaagtcggggtatttagtgaaaattaaagttgatcctcaggagaatgtttcggatcaagctgaggtaataacact |
2879367 |
T |
|
| Q |
360 |
acatcctgattgtat |
374 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
2879368 |
acatcctggttgtat |
2879382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 370 - 451
Target Start/End: Original strand, 2890595 - 2890676
Alignment:
| Q |
370 |
tgtattttggatgactcacattgggatgtaagtcctaaagatgacaagctcttgttggtcttgtctagaaatgaggatcttg |
451 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2890595 |
tgtattttggatgattcacattgggatgtaagttctaaagatgacaagctcttgttggtcttgtctagaaatgaggatcttg |
2890676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 295 - 377
Target Start/End: Complemental strand, 2090031 - 2089949
Alignment:
| Q |
295 |
tatttagtgaaaattaaagttgatcctcaggagaatgtttcggatcaagctgaggtaataacactacatcctgattgtatttt |
377 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||| |||||||||||| |||| |
|
|
| T |
2090031 |
tatttattgaaaattaaagttgatcctcaagagaatgcctcgaatcaagctgagataataacacttcatcctgattgtgtttt |
2089949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 2090246 - 2090153
Alignment:
| Q |
83 |
attcatatgctgctctcgcatatgaccctgcagaatcttggtttttcaagattgcgcgttttcagggtcttcgtcatgtgaacattttctcctc |
176 |
Q |
| |
|
|||||||||||||||| | |||||||||| ||||||||||||| |||||||||| | |||||||| || | | ||| | || ||||||||||| |
|
|
| T |
2090246 |
attcatatgctgctctggtatatgacccttcagaatcttggttcttcaagattgtacattttcaggatcatggccatattaatattttctcctc |
2090153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University