View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_19 (Length: 478)
Name: NF1148_low_19
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 189 - 471
Target Start/End: Original strand, 9202620 - 9202902
Alignment:
| Q |
189 |
caaataaaagaaagcaaccctagcaacatggtacacgtccctcccaaactcagtcaaagcattcaactctctagaagccttttcatacaaccgacaccct |
288 |
Q |
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| T |
9202620 |
caaataaaagaaagcaaccctagcaacatggtacacgtccctcccaaactcagtcaaagcattcaactctctagaagccttttcatacacccgacacctt |
9202719 |
T |
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| Q |
289 |
acaaacgcaggaacgaacaaccgcaacgccgtacaccaaacaaacaccaccgtaaacaaccacgacaccaccgtcggcaaccgcaccttatctccaaaca |
388 |
Q |
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| T |
9202720 |
acaagcgccggaacgaacaaccacaacgccgtacaccaaacaaacaccaccgtaaacaaccacgacaccacagtcggcaaccgcaccttatctccaaaca |
9202819 |
T |
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| Q |
389 |
tctttttaacaccaacttgaacaaccaaacacaccccatgcaaaatgaaaaaacacattgcatcccacgagggttcctatgct |
471 |
Q |
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| T |
9202820 |
tctttttaacaccaacttgaacaaccaaacacaccccatgcaaaatgaaaaaacacattgcatcccacgagggttcccatgct |
9202902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 9202270 - 9202400
Alignment:
| Q |
29 |
acacaaaatagtttatttcctctaaaggaaaaagaaaaacatagtttcttaaccaattaaaagaaataagtttctcctatcatgaatcga-nnnnnnngg |
127 |
Q |
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| T |
9202270 |
acacaaaatagtttatttcctctaaaggaaaaa--aaaacatagtttcttaaccaattaaaagaaataagtgtctcctatcatgaatcgattttttttgg |
9202367 |
T |
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| Q |
128 |
aagaaaaatcattacaaattggggagaatatta |
160 |
Q |
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| T |
9202368 |
aagaaaaatcattacaaattggggagaatatta |
9202400 |
T |
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