View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1148_low_2 (Length: 734)

Name: NF1148_low_2
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1148_low_2
NF1148_low_2
[»] chr5 (10 HSPs)
chr5 (29-723)||(25887506-25888200)
chr5 (190-607)||(25910274-25910691)
chr5 (215-563)||(25928136-25928486)
chr5 (246-566)||(25957132-25957452)
chr5 (29-152)||(25910138-25910260)
chr5 (643-723)||(25911329-25911409)
chr5 (134-178)||(8287837-8287880)
chr5 (134-178)||(15480595-15480638)
chr5 (134-175)||(7369760-7369800)
chr5 (134-175)||(18333473-18333513)
[»] chr3 (9 HSPs)
chr3 (278-513)||(33423499-33423731)
chr3 (134-179)||(389639-389683)
chr3 (134-178)||(8019004-8019047)
chr3 (134-178)||(16239627-16239670)
chr3 (134-178)||(31317264-31317307)
chr3 (134-178)||(33640081-33640124)
chr3 (134-179)||(20303068-20303112)
chr3 (134-179)||(20327618-20327662)
chr3 (134-186)||(35038190-35038242)
[»] chr4 (4 HSPs)
chr4 (428-502)||(37610214-37610288)
chr4 (134-178)||(20822009-20822052)
chr4 (134-178)||(53814679-53814722)
chr4 (135-178)||(37836117-37836159)
[»] chr2 (5 HSPs)
chr2 (427-502)||(1370192-1370267)
chr2 (134-179)||(2324276-2324320)
chr2 (134-179)||(15451453-15451497)
chr2 (133-178)||(17525104-17525148)
chr2 (134-179)||(37840373-37840417)
[»] chr8 (5 HSPs)
chr8 (134-178)||(4828329-4828372)
chr8 (134-178)||(4963390-4963433)
chr8 (134-178)||(26800517-26800560)
chr8 (134-178)||(38476074-38476117)
chr8 (134-179)||(16962250-16962294)
[»] chr6 (4 HSPs)
chr6 (134-178)||(19712988-19713031)
chr6 (134-178)||(27656494-27656537)
chr6 (134-165)||(15081925-15081956)
chr6 (134-165)||(15082161-15082192)
[»] chr7 (2 HSPs)
chr7 (135-178)||(21861331-21861373)
chr7 (134-179)||(17202215-17202259)
[»] chr1 (4 HSPs)
chr1 (134-165)||(51590074-51590105)
chr1 (137-178)||(25137308-25137348)
chr1 (134-183)||(38080640-38080688)
chr1 (134-163)||(41035846-41035875)


Alignment Details
Target: chr5 (Bit Score: 643; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 29 - 723
Target Start/End: Original strand, 25887506 - 25888200
Alignment:
Q  29 atttccaaggattcatcaacgacataaaacaaagcatgctttgcagtctgcacaacacaacaaacaaaactcaaagacaaatttgaggacggcttgtcta 128  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25887506 atttccaaggattcatcaacgagataaaacaaagcatgctttgcagtctgcacaacacaacaaacaaaactcaaagacaaatttgaggacggcttgtcta 25887605  T
Q  129 ataagcacaagccggttttgtgggattgtgttaggcctcaaccacaattttaagaatgctagacttatcgtaattgttcaccatagaattaatcatcgaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25887606 ataagcacaagccggttttgtgggattgtgttaggcctcaaccacgattttaagaatgctagacttatcgtaattgttcaccatagaattaatcatcgaa 25887705  T
Q  229 ggactaaaccatagagaaaagaaaacttactttggcatcaaaaacataacgattcacacccttccaattttccaaatcataggcagtaaagtgtttgcaa 328  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25887706 ggactaaaccatagagaaaagaaaacttactttggcatcgaaaacataacgattcacacccttccaattttccaaatcataggcagtaaagtgtttgcaa 25887805  T
Q  329 caagcagaagctttaagacgacctccaatcagtttcccaccttcaaaggaatccccttgaagtcctctcacataggaaacaccatactttgaatttacca 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25887806 caagcagaagctttaagacgacctccaatcagtttcccaccttcaaaggaatcaccttgaagtcctctcacataggaaacaccatactttgaatttacca 25887905  T
Q  429 aaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccctaaatatgtttatgtttggtgcccaaaacgtcatcccttgagcttgtccagc 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25887906 aaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccctaaatatgtttatgtttggtgcccaaaacgtcatcccttgagcttgtccagc 25888005  T
Q  529 attgtacactcctctagcctcagttccaatcaccttcattcatacaacacataaaaataattacaatacaaacaaaactcgggtatctgcttggtgactg 628  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  25888006 attgtacactcctctagcctcagttccaatcaccttcattcatacaacacataataataattacaatacaaacaatactcgggtatctgcttggtgactg 25888105  T
Q  629 acgtggcagactacttcaggagacttatctcaccgtccattagtagaattcatttaaaatcataaccatgtatgaaccaactcaatactagaatt 723  Q
    ||||| ||||||||||||||||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  25888106 acgtgacagactacttcaggagactaatctcacggcccattagtagaattcatttgaaatcataaccatgtatgaacccactcaatactataatt 25888200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 190 - 607
Target Start/End: Original strand, 25910274 - 25910691
Alignment:
Q  190 gacttatcgtaattgttcaccatagaattaatcatcgaaggactaaaccatagagaaaagaaaacttactttggcatcaaaaacataacgattcacaccc 289  Q
    |||||||| || ||||||||| |||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25910274 gacttatcttatttgttcaccgtagaattaatcatccaaagactaaaccatagagacaagaaaacttactttggcatcaaaaacataacgattcacaccc 25910373  T
Q  290 ttccaattttccaaatcataggcagtaaagtgtttgcaacaagcagaagctttaagacgacctccaatcagtttcccaccttcaaaggaatccccttgaa 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25910374 ttccaattttccaaatcataggcagtaaagtgtttgcaacaagcagaagctttaagacgacctccaatcagtttcccaccttcaaaggaatcaccttgaa 25910473  T
Q  390 gtcctctcacataggaaacaccatactttgaatttaccaaaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccctaaatatgtttat 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25910474 gtcctctcacataggaaacaccatactttgaatttaccaaaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccctgaatatgtttat 25910573  T
Q  490 gtttggtgcccaaaacgtcatcccttgagcttgtccagcattgtacactcctctagcctcagttccaatcaccttcattcatacaacacataaaaataat 589  Q
    |||||||||||||||  |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25910574 gtttggtgcccaaaaattcatcccttgggcttgtccagcattgtatactcctctagcctcagttccaatcaccttcattcatacaacacataataataat 25910673  T
Q  590 tacaatacaaacaaaact 607  Q
    |||||  |||||||||||    
T  25910674 tacaaagcaaacaaaact 25910691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 215 - 563
Target Start/End: Original strand, 25928136 - 25928486
Alignment:
Q  215 aattaatcatcgaaggactaaa--ccatagagaaaagaaaacttactttggcatcaaaaacataacgattcacacccttccaattttccaaatcataggc 312  Q
    ||||||||||| |||||||| |  ||||||||||||||||||||||||||||||||||| || |||| | || |||||||||||| ||||||||||||||    
T  25928136 aattaatcatccaaggactatatgccatagagaaaagaaaacttactttggcatcaaaatcaaaacggtccaaacccttccaattatccaaatcataggc 25928235  T
Q  313 agtaaagtgtttgcaacaagcagaagctttaagacgacctccaatcagtttcccaccttcaaaggaatccccttgaagtcctctcacataggaaacacca 412  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||    
T  25928236 agtaaaatgtttgcaacaagcagaagctttaagacgatctccaatcagttttccaccttcaaaggaatctccttgaagtcctcttacataggaaacacca 25928335  T
Q  413 tactttgaatttaccaaaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccctaaatatgtttatgtttggtgcccaaaacgtcatcc 512  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25928336 tactttgaattcaccaaaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccctaaatatgtttatgtttggtgcccaaaacgtcatcc 25928435  T
Q  513 cttgagcttgtccagcattgtacactcctctagcctcagttccaatcacct 563  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25928436 cttgagcttgtccagcattgtacactcctctagcctcagttccaatcacct 25928486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 246 - 566
Target Start/End: Complemental strand, 25957452 - 25957132
Alignment:
Q  246 aaagaaaacttactttggcatcaaaaacataacgattcacacccttccaattttccaaatcataggcagtaaagtgtttgcaacaagcagaagctttaag 345  Q
    ||||||||||||| |||||||||||  || |||||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  25957452 aaagaaaacttacattggcatcaaagtcaaaacgatccacacctttccaattatccaaatcataggcagtaaagtgtttacaacaagcagaagctttaag 25957353  T
Q  346 acgacctccaatcagtttcccaccttcaaaggaatccccttgaagtcctctcacataggaaacaccatactttgaatttaccaaaggatcttcaccagct 445  Q
    |||| || || | ||||||||||||||||||||||| |||||||| ||||||||| |||||||| ||||||||| | |||||||||||||||||||||||    
T  25957352 acgatcttcattaagtttcccaccttcaaaggaatcaccttgaagacctctcacaaaggaaacagcatactttgcacttaccaaaggatcttcaccagct 25957253  T
Q  446 gtttcttgtcctcttccccatcttgggtccctaaatatgtttatgtttggtgcccaaaacgtcatcccttgagcttgtccagcattgtacactcctctag 545  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |  ||||||||||||||||||||| | || |    
T  25957252 gtctcttgccctcttccccatcttgggtccctaaatatgtttatgtttggtgcccaaaatgtcatcccctctgcttgtccagcattgtacactgcccttg 25957153  T
Q  546 cctcagttccaatcaccttca 566  Q
    | || ||||||||||||||||    
T  25957152 cttcggttccaatcaccttca 25957132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 25910138 - 25910260
Alignment:
Q  29 atttccaaggattcatcaacgacataaaacaaagcatgctttgcagtctgcacaacacaacaaacaaaactcaaagacaaatttgaggacggc-ttgtct 127  Q
    |||| |||||||||| |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||  |||||||||  |||||| | ||||||    
T  25910138 attttcaaggattcaacaacgacataaaacaaagcatgttttgtagtctgcataacacaacaaacaaaactc--agacaaattcaaggacgacattgtct 25910235  T
Q  128 aataagcacaagccggttttgtggg 152  Q
    |||| |||||| ||| |||||||||    
T  25910236 aatatgcacaaaccgattttgtggg 25910260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 643 - 723
Target Start/End: Original strand, 25911329 - 25911409
Alignment:
Q  643 ttcaggagacttatctcaccgtccattagtagaattcatttaaaatcataaccatgtatgaaccaactcaatactagaatt 723  Q
    ||||||||||| ||||||||| | | |||||| |||||||| |||||||||| ||||||||||  ||||||||||| ||||    
T  25911329 ttcaggagactaatctcaccgcctagtagtaggattcatttgaaatcataactatgtatgaactgactcaatactaaaatt 25911409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 8287837 - 8287880
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||    
T  8287837 cacaagccggttttgtggggttgtgttaggcc-caaccacaattt 8287880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 15480595 - 15480638
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||    
T  15480595 cacaagccggttttgtggggttgtgttaggcc-caaccacaattt 15480638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 7369760 - 7369800
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaa 175  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  7369760 cacaagccggttttgtggggttgtgttaggcc-caaccacaa 7369800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 18333513 - 18333473
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaa 175  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  18333513 cacaagccggttttgtggggttgtgttaggcc-caaccacaa 18333473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 278 - 513
Target Start/End: Original strand, 33423499 - 33423731
Alignment:
Q  278 cgattcacacccttccaattttccaaatcataggcagtaaagtgtttgcaacaagcagaagctttaagacgacctccaatcagtttcccaccttcaaagg 377  Q
    ||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| |||  | || |   ||| ||| || |||| ||| |    
T  33423499 cgattaacacccttccaattgtccaaatcataggcagtgaaatgtttgcaacaagcagaagcttgaaggtgtcccc---tcaatttacctccttgaaaag 33423595  T
Q  378 aatccccttgaagtcctctcacataggaaacaccatactttgaatttaccaaaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccct 477  Q
    |||| |||||||||||||| |||||||||||| |||| || ||| | | || |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  33423596 aatcaccttgaagtcctctaacataggaaacagcatagttagaagtcatcataggatcttcaccagctgtttcttgtcctctcccccatcttggatccct 33423695  T
Q  478 aaatatgtttatgtttggtgcccaaaacgtcatccc 513  Q
     |||||||||||||||||||||||||| ||||||||    
T  33423696 gaatatgtttatgtttggtgcccaaaatgtcatccc 33423731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 389683 - 389639
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaatttt 179  Q
    |||||||||||||||||||||||||||| | |||||||||||||||    
T  389683 cacaagccggttttgtgggattgtgttatg-ctcaaccacaatttt 389639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 8019004 - 8019047
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||    
T  8019004 cacaagccggttttgtggggttgtgttaggcc-caaccacaattt 8019047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 16239627 - 16239670
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||    
T  16239627 cacaagccggttttgtgggattgtgttaggcc-caaccacgattt 16239670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 31317264 - 31317307
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||    
T  31317264 cacaagccggttttgtgggattgtgttagg-ctcaaccacgattt 31317307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 33640081 - 33640124
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||    
T  33640081 cacaagccggttttgtgggattgtgttaggcc-caatcacaattt 33640124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 20303112 - 20303068
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaatttt 179  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||||    
T  20303112 cacaaaccggttttgtgggattgtgttagg-ctcaaccacgatttt 20303068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 20327662 - 20327618
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaatttt 179  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||    
T  20327662 cacaagccggttttgtggggttgtgttaggcc-caaccacgatttt 20327618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 35038242 - 35038190
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt-taagaatg 186  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||| ||||||||    
T  35038242 cacaagccggttttgtggggttgtgttaggcc-caaccacgatttctaagaatg 35038190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 428 - 502
Target Start/End: Complemental strand, 37610288 - 37610214
Alignment:
Q  428 aaaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccctaaatatgtttatgtttggtgcccaa 502  Q
    ||||| ||||| || | ||||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  37610288 aaagggtcttctcctggtgtttcttgacctcttccccatcttggatccctaaatatgttaatgtttggtgaccaa 37610214  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 20822009 - 20822052
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||    
T  20822009 cacaagccggttttgtgggattgtgttaggcc-caaccacgattt 20822052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 53814722 - 53814679
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||    
T  53814722 cacaagccggttttgtgggattgtgttaggcc-caaccacgattt 53814679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 37836117 - 37836159
Alignment:
Q  135 acaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    |||||||||||||||||| ||||||||||||| |||||||||||    
T  37836117 acaagccggttttgtggggttgtgttaggcct-aaccacaattt 37836159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 427 - 502
Target Start/End: Original strand, 1370192 - 1370267
Alignment:
Q  427 caaaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccctaaatatgtttatgtttggtgcccaa 502  Q
    |||||| |||||||| | |||||||||||| |||||||||||||| || || |||||||| |||||||||| ||||    
T  1370192 caaagggtcttcacctggtgtttcttgtccccttccccatcttggatctctgaatatgttaatgtttggtgaccaa 1370267  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 2324276 - 2324320
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaatttt 179  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||    
T  2324276 cacaagccggttttgtggggttgtgttaggcc-caaccacgatttt 2324320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 15451497 - 15451453
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaatttt 179  Q
    ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  15451497 cacaagccgattttgtgggattgtggtaggcc-caaccacaatttt 15451453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 17525148 - 17525104
Alignment:
Q  133 gcacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  17525148 gcacaagccggttttgtggaattgtgtcaggcc-caaccacaattt 17525104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 37840373 - 37840417
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaatttt 179  Q
    ||||||||||||||||||| ||||||| |||| |||||||||||||    
T  37840373 cacaagccggttttgtggggttgtgttgggcc-caaccacaatttt 37840417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 4828329 - 4828372
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||    
T  4828329 cacaagccggttttgtggggttgtgttaggcc-caaccacaattt 4828372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 4963390 - 4963433
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||    
T  4963390 cacaagccggttttgtggggttgtgttaggcc-caaccacaattt 4963433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 26800560 - 26800517
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||    
T  26800560 cacaagccggttttgtggggttgtgttaggcc-caaccacaattt 26800517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 38476074 - 38476117
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  38476074 cacaagccggttttgtgggattatgttaggcc-caaccacaattt 38476117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 16962294 - 16962250
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaatttt 179  Q
    ||||| |||||||||||||||||||||||| | |||||||||||||    
T  16962294 cacaaaccggttttgtgggattgtgttaggtc-caaccacaatttt 16962250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 19712988 - 19713031
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||    
T  19712988 cacaagccggttttgtgggattgtgttaggcc-caaccaccattt 19713031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 27656494 - 27656537
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||    
T  27656494 cacaagccggttttgtggggttgtgttaggcc-caaccacaattt 27656537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 165
Target Start/End: Complemental strand, 15081956 - 15081925
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcc 165  Q
    ||||||||||||||||||||||||||||||||    
T  15081956 cacaagccggttttgtgggattgtgttaggcc 15081925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 165
Target Start/End: Complemental strand, 15082192 - 15082161
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcc 165  Q
    ||||||||||||||||||||||||||||||||    
T  15082192 cacaagccggttttgtgggattgtgttaggcc 15082161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 21861331 - 21861373
Alignment:
Q  135 acaagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||    
T  21861331 acaagccggttttgtgggattgtgttaggcc-caaccaccattt 21861373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 17202215 - 17202259
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaatttt 179  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||    
T  17202215 cacaagccggttttgtggggttgtgttaggcc-caaccacgatttt 17202259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 165
Target Start/End: Original strand, 51590074 - 51590105
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcc 165  Q
    ||||||||||||||||||||||||||||||||    
T  51590074 cacaagccggttttgtgggattgtgttaggcc 51590105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 25137348 - 25137308
Alignment:
Q  137 aagccggttttgtgggattgtgttaggcctcaaccacaattt 178  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  25137348 aagccggttttgtggggttgtgttaggcc-caaccacaattt 25137308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 38080640 - 38080688
Alignment:
Q  134 cacaagccggttttgtgggattgtgttaggcctcaaccacaattttaaga 183  Q
    |||||||| |||||||||| |||||||||||| |||||||||||| ||||    
T  38080640 cacaagccagttttgtggggttgtgttaggcc-caaccacaatttgaaga 38080688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 163
Target Start/End: Complemental strand, 41035875 - 41035846
Alignment:
Q  134 cacaagccggttttgtgggattgtgttagg 163  Q
    ||||||||||||||||||||||||||||||    
T  41035875 cacaagccggttttgtgggattgtgttagg 41035846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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