View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1148_low_20 (Length: 472)
Name: NF1148_low_20
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 8641773 - 8642231
Alignment:
| Q |
1 |
gaccggcgccacaaaaagaagctgctcctggtcttgcatactttcacatccccttgccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8641773 |
gaccggcgccacaaaaagaagctgctcctggtcttgcatactttcacatccccttaccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaa |
8641872 |
T |
|
| Q |
101 |
aatggaaatggatggcggtgatggcattggttctgcttcagtgaactctggtttcttcacaaccttggttggagcagaagacgtgaaggccgttttcgtt |
200 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
8641873 |
aatggaaacatatagcggtgatggcattagttctgcgtcggtgaactctggtttcttcacaaccttggtcggagcaggagacgtgaaggccgttttcgtt |
8641972 |
T |
|
| Q |
201 |
ggccacgatcacctcaatgacttctgcgggaagctaatggatatacaactttgttatgctggagggttcggataccatgcttatggaaaggctggatggt |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8641973 |
ggccacgatcacctgaatgacttctgcggcaagctaatggatatacaactttgttatgctggagggttcggataccatgcttatggaaaggctggatggt |
8642072 |
T |
|
| Q |
301 |
ctcggagggcaagagtggtggtagctagcttggagaagacagataaaggaagttggggggccgtcaagtcgattaaatcatggaagcgtctcgatgatca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
8642073 |
ctcggagggcaagagtggtggtagctagcttggagaagacagataaaggaagctggggagctgtcaaatcaattaaatcatggaagcgcctcgatgatca |
8642172 |
T |
|
| Q |
401 |
gcatcttactggaattgatggtgaggtcctatggagcaagagcactcccggtaagatat |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8642173 |
gcatcttactggaattgatggtgaggtcctatggagcaagagcactcccggtaagatat |
8642231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 8648353 - 8648811
Alignment:
| Q |
1 |
gaccggcgccacaaaaagaagctgctcctggtcttgcatactttcacatccccttgccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8648353 |
gaccggcgccacaaaaagaagctgctcctggtcttgcatactttcacatccccttaccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaa |
8648452 |
T |
|
| Q |
101 |
aatggaaatggatggcggtgatggcattggttctgcttcagtgaactctggtttcttcacaaccttggttggagcagaagacgtgaaggccgttttcgtt |
200 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
8648453 |
aatggaaacatatagcggtgatggcattagttctgcgtcggtgaactctggtttcttcacaaccttggtcggagcaggagacgtgaaggccgttttcgtt |
8648552 |
T |
|
| Q |
201 |
ggccacgatcacctcaatgacttctgcgggaagctaatggatatacaactttgttatgctggagggttcggataccatgcttatggaaaggctggatggt |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8648553 |
ggccacgatcacctgaatgacttctgcggcaagctaatggatatacaactttgttatgctggagggttcggataccatgcttatggaaaggctggatggt |
8648652 |
T |
|
| Q |
301 |
ctcggagggcaagagtggtggtagctagcttggagaagacagataaaggaagttggggggccgtcaagtcgattaaatcatggaagcgtctcgatgatca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
8648653 |
ctcggagggcaagagtggtggtagctagcttggagaagacagataaaggaagctggggagctgtcaaatcaattaaatcatggaagcgcctcgatgatca |
8648752 |
T |
|
| Q |
401 |
gcatcttactggaattgatggtgaggtcctatggagcaagagcactcccggtaagatat |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8648753 |
gcatcttactggaattgatggtgaggtcctatggagcaagagcacttccggtaagatat |
8648811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University