View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1148_low_21 (Length: 464)
Name: NF1148_low_21
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 192 - 453
Target Start/End: Complemental strand, 5180247 - 5179986
Alignment:
| Q |
192 |
attattcgctttagtgtctaaagtgagttggtcaatttagaggaaacaaatctaatgtttgaatactatacctcaaagtcaccggagatttctgactcaa |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5180247 |
attattcgctttagtgtctaaagtgagttggtcaatttcaaggagacaaatctaatgtttgaatactatacctcaaagtcaccggagatttctgactcaa |
5180148 |
T |
|
| Q |
292 |
gacgtttgatgagatcctcttcaaaaagctcctcataagcttttctaatctgttgcctctgatgaacatttctatgacccaaaattgcaataatggcctt |
391 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5180147 |
gacgtttgatgagatcctcttcgaaaagctcctcataagcttttctaatctgttgcctctgatgaacatttctatgacccaaaattgcaataatggcctt |
5180048 |
T |
|
| Q |
392 |
gttatcagccccccatcctgcagagtttgaaaaataaataaaacacaatatcacaatttcat |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5180047 |
gttatcagccccccatcctgcagagtttgaaaaataaataaaacacaatatcacaatttcat |
5179986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 372
Target Start/End: Original strand, 14153060 - 14153173
Alignment:
| Q |
259 |
atacctcaaagtcaccggagatttctgactcaagacgtttgatgagatcctcttcaaaaagctcctcataagcttttctaatctgttgcctctgatgaac |
358 |
Q |
| |
|
|||||||||||| ||| |||| ||| || ||||| ||||||||||||||||||| | ||| |||| |||||||| |||||| |||||||| ||| | | |
|
|
| T |
14153060 |
atacctcaaagttaccagagagttcagattcaaggcgtttgatgagatcctcttgataaatgtcctgataagcttgtctaatttgttgcctttgaacagc |
14153159 |
T |
|
| Q |
359 |
atttctatgaccca |
372 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
14153160 |
atttctctgaccca |
14153173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 260 - 370
Target Start/End: Original strand, 14174503 - 14174613
Alignment:
| Q |
260 |
tacctcaaagtcaccggagatttctgactcaagacgtttgatgagatcctcttcaaaaagctcctcataagcttttctaatctgttgcctctgatgaaca |
359 |
Q |
| |
|
||||||||||||||| |||| ||| || ||||| ||||||| || |||||||| ||| |||| ||||| |||||| || ||||| ||||||| |||| |
|
|
| T |
14174503 |
tacctcaaagtcaccagagagttcagattcaaggcgtttgaggatatcctcttggtaaatttcctgataagattttctgatttgttgtctctgataaaca |
14174602 |
T |
|
| Q |
360 |
tttctatgacc |
370 |
Q |
| |
|
||||||||||| |
|
|
| T |
14174603 |
tttctatgacc |
14174613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University