View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1148_low_23 (Length: 443)
Name: NF1148_low_23
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_23 |
 | |
|
| [»] scaffold0415 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 52 - 287
Target Start/End: Original strand, 13211868 - 13212103
Alignment:
| Q |
52 |
cacatgctaccttctgctgcttcatttggaagcaactaagaacatttttagctgaacaagaaaattaatttaactgttttggatgcaatatcataaaatt |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13211868 |
cacatgctaccttctgctgcttcatttggaagcaactaagaacatttttagctgaacaagaaaattaatttaactgttttggatgcaatatcataaaatt |
13211967 |
T |
|
| Q |
152 |
caaaccccacaaaaaattcatgaatttatacatccttctttcaattcaacatcatcaagtagtcaacttaataccatgatcaaagaaaagtcttcaattt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13211968 |
caaaccccacaaaaaattcatgaatttatacatccttctttcaattcaacatcatcaagtagtcaacttaataccatgatcaaagaaaagtcttcaattt |
13212067 |
T |
|
| Q |
252 |
aaactaagttataaggagaatgaacaagtgatagat |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
13212068 |
aaactaagttataaggagaatgaacaagtgatagat |
13212103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 367 - 443
Target Start/End: Original strand, 13212184 - 13212260
Alignment:
| Q |
367 |
catgatgagaaaagtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13212184 |
catgatgagaaaagtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttc |
13212260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 13555 - 13519
Alignment:
| Q |
407 |
aaaaaggaggacgagcacttccaccccaataaccttc |
443 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
13555 |
aaaatggaggacgagcacttccacaccaataaccttc |
13519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 443
Target Start/End: Original strand, 29845934 - 29845970
Alignment:
| Q |
407 |
aaaaaggaggacgagcacttccaccccaataaccttc |
443 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
29845934 |
aaaatggaggacgagcacttccacaccaataaccttc |
29845970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University