View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_25 (Length: 435)
Name: NF1148_low_25
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 10 - 391
Target Start/End: Complemental strand, 37163122 - 37162741
Alignment:
| Q |
10 |
aagaatatcaatgatgctttgaaacaggttccaaagaagaaccaaaaaccttttgttattcatatcaaggagggtgtttatcatgagtatgttgaagtta |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37163122 |
aagaaaatcaatgatgctttgaaacaggttccaaagaagaaccaaaaaccttttgttattcatatcaaggagggtgtttatcatgagtatgttgaagtta |
37163023 |
T |
|
| Q |
110 |
ctaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatggaattaacacttaccaaac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37163022 |
ctaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatggaattaacacttaccaaac |
37162923 |
T |
|
| Q |
210 |
ccccactgtcggtacgtgttttagagacgaatttcacatttttctttccttaacatgtcgctatttcagctttttctatgtacaaaactatacatgggaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162922 |
ccccactgtcggtacgtgttttagagacgaatttcacaattttctttccttaacatgtcgctatttcagctttttctatgtacaaaactatacatgggaa |
37162823 |
T |
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| Q |
310 |
gcaactataaataaatcaacttaaaaaccagtatgcatggttaataagagatatagtattatgggaattaagtaagaatatg |
391 |
Q |
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| T |
37162822 |
gcaactataaataaatcaacttaaaaaccagtatgcatggttaataagagatatagtattatgggaattaagtaagaatatg |
37162741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 37150213 - 37150342
Alignment:
| Q |
94 |
gagtatgttgaagttactaagaaa-atgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatgga |
192 |
Q |
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| T |
37150213 |
gagtatgttgaagttt-taacaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcaataatcaccggcaacaaaaactttatggatgga |
37150311 |
T |
|
| Q |
193 |
attaacacttaccaaacccccactgtcggta |
223 |
Q |
| |
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||| |||||||| ||| ||||||| |||| |
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| T |
37150312 |
gttacgacttaccacaccgccactgttggta |
37150342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 37159038 - 37159167
Alignment:
| Q |
94 |
gagtatgttgaagttactaagaaa-atgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatgga |
192 |
Q |
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||||||||||||||| ||| ||| ||||| ||| |||||||| | ||||||||||| || ||| ||| ||| || ||||||||||| ||||| |||||| |
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| T |
37159038 |
gagtatgttgaagttt-taacaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcaataatcaccggcaacaaaaactttatggatgga |
37159136 |
T |
|
| Q |
193 |
attaacacttaccaaacccccactgtcggta |
223 |
Q |
| |
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||| |||||||| ||| ||||||| |||| |
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| T |
37159137 |
gttacgacttaccacaccgccactgttggta |
37159167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 37155327 - 37155198
Alignment:
| Q |
94 |
gagtatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatggaa |
193 |
Q |
| |
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||||||||||||||| || || ||||| ||| |||||||| | ||||||||||| || ||| | | ||| |||||||||||||| | ||| |||||| |
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| T |
37155327 |
gagtatgttgaagttttaaaaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcgataatcactggcaacaaaaactatatggatggag |
37155228 |
T |
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| Q |
194 |
ttaacacttaccaaacccccactgtcggta |
223 |
Q |
| |
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||| ||| ||||| ||| ||||||| |||| |
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| T |
37155227 |
ttaccacctaccataccaccactgttggta |
37155198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 61 - 192
Target Start/End: Original strand, 46315113 - 46315244
Alignment:
| Q |
61 |
tttgttattcatatcaaggagggtgtttatcatgagtatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaa |
160 |
Q |
| |
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||||||||| | |||||||||||||||||| | |||||||||||||||||||| | |||||||| ||||| || | ||||||||||| | |||||| |
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| T |
46315113 |
tttgttatttacatcaaggagggtgtttataaagagtatgttgaagttactaaaaccatgactcacgttgttttcatcggtgatggtggtagaaagacac |
46315212 |
T |
|
| Q |
161 |
gaattactggcaacaaaaattttatagatgga |
192 |
Q |
| |
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| ||||| ||||| ||||| || || |||||| |
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| T |
46315213 |
gcattacgggcaataaaaacttcattgatgga |
46315244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 223
Target Start/End: Complemental strand, 95583 - 95436
Alignment:
| Q |
76 |
aaggagggtgtttatcatgagtatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaaca |
175 |
Q |
| |
|
||||| |||||||| | ||||||||||||||| || || ||||| ||| |||||||| | ||||||||||| || ||| ||| ||| |||||||||| |
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| T |
95583 |
aaggaaggtgtttaccgagagtatgttgaagttttaaaaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcaataatcactggcaaca |
95484 |
T |
|
| Q |
176 |
aaaattttatagatggaattaacacttaccaaacccccactgtcggta |
223 |
Q |
| |
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|||| | ||| |||||| ||| ||| ||||| ||| ||||||| |||| |
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| T |
95483 |
aaaactatatggatggagttaccacctaccataccaccactgttggta |
95436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 92258 - 92129
Alignment:
| Q |
94 |
gagtatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatggaa |
193 |
Q |
| |
|
||||||||||||||| || || ||||| ||| |||||||| | ||||||||||| || ||| ||| ||| |||||||||||||| | ||| |||||| |
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| T |
92258 |
gagtatgttgaagttttaaaaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcaataatcactggcaacaaaaactatatggatggag |
92159 |
T |
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| Q |
194 |
ttaacacttaccaaacccccactgtcggta |
223 |
Q |
| |
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||| ||| ||||| ||| ||||||| |||| |
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| T |
92158 |
ttaccacctaccataccaccactgttggta |
92129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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