View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1148_low_28 (Length: 402)

Name: NF1148_low_28
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1148_low_28
NF1148_low_28
[»] chr1 (12 HSPs)
chr1 (54-350)||(27682935-27683241)
chr1 (50-112)||(34522122-34522184)
chr1 (50-110)||(17836791-17836851)
chr1 (50-110)||(30676669-30676729)
chr1 (41-113)||(50048239-50048311)
chr1 (53-112)||(23224629-23224688)
chr1 (57-102)||(23420485-23420530)
chr1 (51-96)||(11768899-11768944)
chr1 (57-102)||(25664822-25664867)
chr1 (84-112)||(12484510-12484538)
chr1 (51-79)||(25493979-25494007)
chr1 (50-110)||(26202211-26202271)
[»] scaffold0171 (1 HSPs)
scaffold0171 (40-112)||(7349-7421)
[»] chr7 (30 HSPs)
chr7 (45-102)||(7152116-7152173)
chr7 (45-112)||(7143571-7143638)
chr7 (50-112)||(21544680-21544742)
chr7 (53-112)||(7494496-7494555)
chr7 (51-112)||(3401077-3401138)
chr7 (41-113)||(18494554-18494626)
chr7 (47-112)||(4091346-4091411)
chr7 (50-107)||(9687085-9687142)
chr7 (51-112)||(14074486-14074547)
chr7 (51-112)||(14384514-14384575)
chr7 (50-112)||(9121026-9121088)
chr7 (57-102)||(2352143-2352188)
chr7 (49-97)||(9974252-9974300)
chr7 (56-112)||(21473033-21473089)
chr7 (63-110)||(3094189-3094236)
chr7 (41-96)||(7776367-7776422)
chr7 (53-99)||(18497202-18497248)
chr7 (50-112)||(24469089-24469150)
chr7 (50-112)||(24474037-24474098)
chr7 (57-98)||(10925081-10925122)
chr7 (65-112)||(7325825-7325871)
chr7 (57-112)||(12357708-12357762)
chr7 (53-108)||(20342222-20342277)
chr7 (50-81)||(20469611-20469642)
chr7 (54-112)||(7816564-7816622)
chr7 (41-113)||(2629645-2629718)
chr7 (50-107)||(9071394-9071451)
chr7 (61-110)||(9404601-9404650)
chr7 (48-76)||(9404664-9404692)
chr7 (56-103)||(18805843-18805891)
[»] chr4 (17 HSPs)
chr4 (50-113)||(22219947-22220010)
chr4 (50-112)||(20717941-20718003)
chr4 (43-109)||(27303948-27304014)
chr4 (50-112)||(12840698-12840760)
chr4 (50-107)||(13553462-13553519)
chr4 (50-109)||(10450301-10450360)
chr4 (53-112)||(12805768-12805827)
chr4 (57-112)||(25367735-25367789)
chr4 (51-102)||(30797703-30797754)
chr4 (50-112)||(24580011-24580072)
chr4 (42-112)||(47023552-47023622)
chr4 (54-101)||(7023034-7023081)
chr4 (41-103)||(51885876-51885938)
chr4 (57-114)||(17331481-17331537)
chr4 (51-104)||(13066862-13066915)
chr4 (57-102)||(24912140-24912185)
chr4 (57-102)||(32022959-32023004)
[»] chr8 (18 HSPs)
chr8 (51-112)||(12957559-12957620)
chr8 (50-112)||(32240448-32240510)
chr8 (60-112)||(13803097-13803149)
chr8 (41-112)||(26853601-26853672)
chr8 (50-111)||(13305660-13305721)
chr8 (57-103)||(28075675-28075721)
chr8 (57-98)||(18790068-18790109)
chr8 (62-111)||(28900132-28900181)
chr8 (56-108)||(6359202-6359254)
chr8 (49-80)||(13581844-13581875)
chr8 (51-110)||(16048617-16048676)
chr8 (51-102)||(27117426-27117477)
chr8 (50-112)||(23894240-23894302)
chr8 (57-102)||(13528953-13528998)
chr8 (57-102)||(13618492-13618537)
chr8 (53-110)||(24121503-24121560)
chr8 (57-114)||(26883495-26883552)
chr8 (65-113)||(1644395-1644443)
[»] chr6 (20 HSPs)
chr6 (51-112)||(13782408-13782469)
chr6 (51-112)||(13789730-13789791)
chr6 (51-112)||(13803985-13804046)
chr6 (45-113)||(17858936-17859004)
chr6 (50-112)||(15576191-15576253)
chr6 (51-112)||(22727241-22727302)
chr6 (60-112)||(13194289-13194341)
chr6 (50-112)||(6091920-6091982)
chr6 (51-100)||(9395432-9395481)
chr6 (56-112)||(6177908-6177964)
chr6 (53-96)||(15387166-15387209)
chr6 (55-101)||(8037051-8037097)
chr6 (53-95)||(15320088-15320130)
chr6 (57-96)||(11076978-11077017)
chr6 (57-112)||(17320789-17320843)
chr6 (53-95)||(15370729-15370771)
chr6 (62-112)||(16529377-16529427)
chr6 (48-93)||(10323308-10323352)
chr6 (51-108)||(13722679-13722736)
chr6 (53-101)||(15350257-15350305)
[»] chr5 (15 HSPs)
chr5 (52-113)||(16617446-16617507)
chr5 (50-112)||(20715837-20715899)
chr5 (50-113)||(16621468-16621531)
chr5 (50-113)||(19571050-19571113)
chr5 (50-112)||(11273684-11273746)
chr5 (50-112)||(18451061-18451123)
chr5 (41-112)||(17768641-17768712)
chr5 (57-116)||(24518959-24519018)
chr5 (50-108)||(25682149-25682207)
chr5 (51-96)||(26502028-26502073)
chr5 (54-109)||(17029270-17029325)
chr5 (64-112)||(26327873-26327921)
chr5 (50-112)||(29196468-29196531)
chr5 (57-110)||(37899059-37899112)
chr5 (54-110)||(24842959-24843015)
[»] chr2 (16 HSPs)
chr2 (50-112)||(41256208-41256271)
chr2 (53-112)||(31000609-31000668)
chr2 (54-111)||(28455128-28455185)
chr2 (57-95)||(4112299-4112337)
chr2 (57-102)||(17495995-17496040)
chr2 (60-101)||(23854055-23854096)
chr2 (71-112)||(27416083-27416124)
chr2 (45-94)||(30477717-30477766)
chr2 (51-90)||(19593276-19593315)
chr2 (57-103)||(31275304-31275351)
chr2 (53-111)||(32138742-32138799)
chr2 (51-114)||(9516529-9516593)
chr2 (51-107)||(21503386-21503442)
chr2 (60-112)||(24318745-24318797)
chr2 (48-111)||(25475255-25475319)
chr2 (41-112)||(35709006-35709078)
[»] scaffold0386 (2 HSPs)
scaffold0386 (51-107)||(7536-7592)
scaffold0386 (51-112)||(10553-10614)
[»] chr3 (10 HSPs)
chr3 (50-109)||(33913400-33913459)
chr3 (51-112)||(25918086-25918147)
chr3 (50-107)||(10343007-10343064)
chr3 (67-112)||(14419353-14419398)
chr3 (57-100)||(8839674-8839717)
chr3 (53-112)||(16977460-16977519)
chr3 (50-112)||(2728447-2728509)
chr3 (51-104)||(5631505-5631558)
chr3 (57-113)||(14541072-14541128)
chr3 (45-81)||(27416366-27416402)
[»] scaffold0362 (1 HSPs)
scaffold0362 (48-110)||(9959-10021)
[»] scaffold0103 (1 HSPs)
scaffold0103 (54-110)||(36494-36550)
[»] scaffold0855 (1 HSPs)
scaffold0855 (50-106)||(2021-2077)
[»] scaffold0847 (1 HSPs)
scaffold0847 (50-106)||(2186-2242)
[»] scaffold0036 (1 HSPs)
scaffold0036 (53-91)||(27356-27394)
[»] scaffold0006 (1 HSPs)
scaffold0006 (67-113)||(78562-78607)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 54 - 350
Target Start/End: Original strand, 27682935 - 27683241
Alignment:
Q  54 ataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatcatagagtcaccttttttatttcatagat-cccatcaaaacgt 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||| || |||||||||||||    
T  27682935 ataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatcatggggtcaccttttttgtttcataaatccccatcaaaacgt 27683034  T
Q  153 tcttggtctttaacatgtaacaaatctggacgtccgaatnnnnnnntattatatctatgatttgcttaaacttttccatcatgnnnnnnnnnnctcattt 252  Q
    |||||||||||||||||||||||||||||||||||| ||       ||||||||||||| | ||||||||||||||||||||           |||||||    
T  27683035 tcttggtctttaacatgtaacaaatctggacgtccgcataaaaaagtattatatctatggtctgcttaaacttttccatcataaaaaacaactctcattt 27683134  T
Q  253 tccatgctaaacctcacccaaatataaatatttgaagttcctac---------tttaaaatataaactatccgatcttgatacaaatccaactaccataa 343  Q
    | ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||| ||||||||| ||    
T  27683135 ttcatgctaaacctcacccaaatataaatatttgaagttcctactttaaaatatttaaaatataaactatccgatcttgatacaaattcaactaccaaaa 27683234  T
Q  344 tgcatgt 350  Q
    |||||||    
T  27683235 tgcatgt 27683241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 34522122 - 34522184
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||    
T  34522122 aacgataaacttactattttattacttgttacgatttggtgcacttgccaatttcttccatca 34522184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 17836851 - 17836791
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccat 110  Q
    |||||||||||||||||||| |||||||||| | ||||||||||||| |||||||||||||    
T  17836851 aacgataaacttactactttcttacttgttatgatttggtgcacttgccaatttcgtccat 17836791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 30676669 - 30676729
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccat 110  Q
    ||||||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  30676669 aacgataaatttactactttattacttgttacgatttggtgaacttgtcaagttcgtccat 30676729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 50048239 - 50048311
Alignment:
Q  41 cctgtgaaaaacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatcat 113  Q
    |||||| | |||||||||||||||||||||||||||||||   |||| |||||||| ||||||||||||||||    
T  50048239 cctgtggagaacgataaacttactactttattacttgttataatttgatgcacttgccaatttcgtccatcat 50048311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 23224629 - 23224688
Alignment:
Q  53 gataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||| ||||||||||||||| ||||  ||||||| |||||||| ||||||    
T  23224629 gataaacttactaccttattacttgttacgatttgacgcacttgccaatttcgcccatca 23224688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 23420530 - 23420485
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatt 102  Q
    |||||||||||||||||||||||||| |||||| |||||| |||||    
T  23420530 aacttactactttattacttgttacgatttggtacacttgccaatt 23420485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 11768944 - 11768899
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttg 96  Q
    |||||||||||||||||||||| ||| ||||| |||| ||||||||    
T  11768944 acgataaacttactactttattccttattacgatttgatgcacttg 11768899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 25664867 - 25664822
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatt 102  Q
    ||||||||||||||||||||| || | ||||||||||||| |||||    
T  25664867 aacttactactttattacttgatatgatttggtgcacttgccaatt 25664822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 112
Target Start/End: Complemental strand, 12484538 - 12484510
Alignment:
Q  84 tttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||||||||||||||||||    
T  12484538 tttggtgcacttgtcaatttcgtccatca 12484510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 25494007 - 25493979
Alignment:
Q  51 acgataaacttactactttattacttgtt 79  Q
    |||||||||||||||||||||||||||||    
T  25494007 acgataaacttactactttattacttgtt 25493979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 26202271 - 26202211
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccat 110  Q
    ||||||||||||||||||||||| ||||||| | ||| | | | |||||||||| ||||||    
T  26202271 aacgataaacttactactttattgcttgttatgattttgcgtaattgtcaattttgtccat 26202211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 7349 - 7421
Alignment:
Q  40 acctgtgaaaaacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7349 acctgtggagaacgataaacttactactttattacttgttacgatttggtgcacttgtcaatttcgtccatca 7421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 7152116 - 7152173
Alignment:
Q  45 tgaaaaacgataaacttactactttattacttgttacggtttggtgcacttgtcaatt 102  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7152116 tgaaaaacgataaacttactactttattacttgttacgatttggtgcacttgtcaatt 7152173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 7143571 - 7143638
Alignment:
Q  45 tgaaaaacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  7143571 tgaagaacgataaacttgctactttattacttgttacgatttggtgcacttgtcaatttcatccatca 7143638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 21544742 - 21544680
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  21544742 aacggtaaacttactactttattacttgttacgatttggtgcacttgccaatttcgtccatca 21544680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 7494496 - 7494555
Alignment:
Q  53 gataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||    
T  7494496 gataaacttactaatttattacttgttacgatttggtgcacttgccaatttcgtccatca 7494555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 3401077 - 3401138
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  3401077 acgataaaattactactttattacttgttacgattttgtgcacttgtcaatttcgtctatca 3401138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 18494626 - 18494554
Alignment:
Q  41 cctgtgaaaaacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatcat 113  Q
    |||||| | ||| ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||| |||||    
T  18494626 cctgtggagaacaataaacttactaccttattacttgttacgatttggtgcacttgccaatttcgtctatcat 18494554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 4091411 - 4091346
Alignment:
Q  47 aaaaacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||| || ||||||||||||||||||||||||||| |||||| |||||| ||||||||| |||||    
T  4091411 aaaaatgaaaaacttactactttattacttgttacgatttggtacacttgccaatttcgttcatca 4091346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 9687142 - 9687085
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtc 107  Q
    ||||||||||||||||||||||||||| ||||| |||| | |||||||||||||||||    
T  9687142 aacgataaacttactactttattacttattacgatttgatacacttgtcaatttcgtc 9687085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 14074486 - 14074547
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||  || ||||||||||||    
T  14074486 acgataaacttactactttattacttgttacgattttgtgcactttccagtttcgtccatca 14074547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 14384514 - 14384575
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||  || ||||||||||||    
T  14384514 acgataaacttactactttattacttgttacgattttgtgcactttccagtttcgtccatca 14384575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 9121088 - 9121026
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||||| |||||  ||||||||    
T  9121088 aacgataaacttactaccttattacttgttacgatttggcgcacttgacaattatgtccatca 9121026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 2352188 - 2352143
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatt 102  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||    
T  2352188 aacttactactttattacttgttacgatttgatgcacttgtcaatt 2352143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 9974252 - 9974300
Alignment:
Q  49 aaacgataaacttactactttattacttgttacggtttggtgcacttgt 97  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  9974252 aaacgataaacttactactttattacatgttaccatttggtgcacttgt 9974300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 21473033 - 21473089
Alignment:
Q  56 aaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||||| |||||||| | |||||||||||||  ||||||||||||||    
T  21473033 aaacttactactttataacttgttatgatttggtgcacttgataatttcgtccatca 21473089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 3094189 - 3094236
Alignment:
Q  63 ctactttattacttgttacggtttggtgcacttgtcaatttcgtccat 110  Q
    |||||||||||||||||||| |||||||| |||||||||||| |||||    
T  3094189 ctactttattacttgttacgatttggtgctcttgtcaatttcctccat 3094236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 7776422 - 7776367
Alignment:
Q  41 cctgtgaaaaacgataaacttactactttattacttgttacggtttggtgcacttg 96  Q
    |||||| | |||||||||||||||||||| |||||||||| | |||||||||||||    
T  7776422 cctgtggagaacgataaacttactactttgttacttgttaagatttggtgcacttg 7776367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 18497202 - 18497248
Alignment:
Q  53 gataaacttactactttattacttgttacggtttggtgcacttgtca 99  Q
    |||||||||||||| || |||||||||||| ||||||||||||||||    
T  18497202 gataaacttactacattgttacttgttacgatttggtgcacttgtca 18497248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 24469150 - 24469089
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||||||| |||||||||||||   |||| ||||||||||||||| ||||||||    
T  24469150 aacgataaacttactaccttattacttgtta-tatttgatgcacttgtcaattttgtccatca 24469089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 24474098 - 24474037
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||||||| |||||||||||||   |||| ||||||||||||||| ||||||||    
T  24474098 aacgataaacttactaccttattacttgtta-tatttgatgcacttgtcaattttgtccatca 24474037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 10925081 - 10925122
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtc 98  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  10925081 aacttactactttattacttgatacgatttggtgcacttgtc 10925122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 7325871 - 7325825
Alignment:
Q  65 actttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||||||| |||| |||||||||||| |||||||||||    
T  7325871 actttattacttgttacgatttgatgcacttgtcaa-ttcgtccatca 7325825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 12357762 - 12357708
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||| ||||||||||| | ||||||||||| ||| |||||||||||    
T  12357762 aacttactactttaatacttgttacgatctggtgcacttgacaa-ttcgtccatca 12357708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 20342222 - 20342277
Alignment:
Q  53 gataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtcc 108  Q
    |||||||||| | ||||||||||||||||| || |||||| ||| |||||||||||    
T  20342222 gataaacttattgctttattacttgttacgattcggtgcatttgccaatttcgtcc 20342277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 20469642 - 20469611
Alignment:
Q  50 aacgataaacttactactttattacttgttac 81  Q
    ||||||||||||||||||||||||||||||||    
T  20469642 aacgataaacttactactttattacttgttac 20469611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 7816564 - 7816622
Alignment:
Q  54 ataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||| || ||||||| ||||||||||  | || ||||||||||||||||||||||||    
T  7816564 ataaacatattactttagtacttgttacaatatgatgcacttgtcaatttcgtccatca 7816622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 2629718 - 2629645
Alignment:
Q  41 cctgtgaaaaacgata-aacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatcat 113  Q
    |||||| | ||||||| |||||||||||||| ||||| || |  |||| ||||||||||||||||||| |||||    
T  2629718 cctgtggagaacgatacaacttactactttactacttattgcaatttgttgcacttgtcaatttcgtcaatcat 2629645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 9071394 - 9071451
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtc 107  Q
    ||||| |||||||||||||| |||||||||||| |||| |||| |||  |||||||||    
T  9071394 aacgaaaaacttactacttttttacttgttacgatttgatgcagttgctaatttcgtc 9071451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 9404650 - 9404601
Alignment:
Q  61 tactactttattacttgttacggtttggtgcacttgtcaatttcgtccat 110  Q
    |||||||||||||||||| ||| |||||||||||||  |||| |||||||    
T  9404650 tactactttattacttgtcacgatttggtgcacttgcaaattacgtccat 9404601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 9404692 - 9404664
Alignment:
Q  48 aaaacgataaacttactactttattactt 76  Q
    |||||||||||||||||||||||||||||    
T  9404692 aaaacgataaacttactactttattactt 9404664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 18805891 - 18805843
Alignment:
Q  56 aaacttactactttattacttgt-tacggtttggtgcacttgtcaattt 103  Q
    |||||||||| |||||||||||  |||| ||||||||||||||||||||    
T  18805891 aaacttactattttattacttgcgtacgatttggtgcacttgtcaattt 18805843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 22219947 - 22220010
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatcat 113  Q
    ||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  22219947 aacgataaacttactactttattacttgttatgatttagtgcacttgtcaatttcgtccatcat 22220010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 20717941 - 20718003
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||    
T  20717941 aacgataaacttactactttattacttgttacgatttggtgcacttgccaatttcgtctatca 20718003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 27303948 - 27304014
Alignment:
Q  43 tgtgaaaaacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtcca 109  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||| |||||  ||||||||||||    
T  27303948 tgtgaaaaacgataaacttactactttattacttattacgatttggtacacttaccaatttcgtcca 27304014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 12840760 - 12840698
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||||||||||| ||||||||||| ||  ||||||||| |||||||||||||||    
T  12840760 aacgataaacttactactttaatacttgttacgattcagtgcacttgccaatttcgtccatca 12840698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 13553519 - 13553462
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtc 107  Q
    ||||||||||||||||||||||||||| ||||| |||| | |||||||||||||||||    
T  13553519 aacgataaacttactactttattacttattacgatttgatacacttgtcaatttcgtc 13553462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 10450360 - 10450301
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtcca 109  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||| ||||||| ||||    
T  10450360 aacgctaaacttactactttattatttgttacgatttggtgcacttgccaatttcatcca 10450301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 12805827 - 12805768
Alignment:
Q  53 gataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||||||||||||||||||| ||||||||| ||  ||||||||| |||||    
T  12805827 gataaacttactactttattacttgttacgatttggtgcatttaccaatttcgttcatca 12805768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 25367735 - 25367789
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||||||||||||| || ||||||||||||||||| |||||||||||    
T  25367735 aacttactactttattacttgtttcgatttggtgcacttgtcaa-ttcgtccatca 25367789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 30797703 - 30797754
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatt 102  Q
    |||||||||||||||||||||||||||||||| |||| |||||||| |||||    
T  30797703 acgataaacttactactttattacttgttacgatttgatgcacttgccaatt 30797754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 24580011 - 24580072
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||| || ||||||| |||||    
T  24580011 aacgataaactaactactttattacttgttacgatttggtgcacttttc-atttcgtacatca 24580072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 47023622 - 47023552
Alignment:
Q  42 ctgtgaaaaacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||| || |||||||||||||| ||||||||||||||| |||| || ||||| ||||||||| |||||    
T  47023622 ctgtgaagaaagataaacttactaccttattacttgttacgatttgatgtacttgccaatttcgttcatca 47023552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 7023081 - 7023034
Alignment:
Q  54 ataaacttactactttattacttgttacggtttggtgcacttgtcaat 101  Q
    |||||||||||||||||||| |||||||| |||||||||||| |||||    
T  7023081 ataaacttactactttattatttgttacgatttggtgcacttatcaat 7023034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 51885876 - 51885938
Alignment:
Q  41 cctgtgaaaaacgataaacttactactttattacttgttacggtttggtgcacttgtcaattt 103  Q
    |||||| | ||| |||||||||||||||||||||||| |||| || |||||||||| ||||||    
T  51885876 cctgtggagaacaataaacttactactttattacttgatacgattcggtgcacttgccaattt 51885938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 17331537 - 17331481
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatcata 114  Q
    ||||||||||||||||||||  |||| |||||||||||| ||||||| ||||||||||    
T  17331537 aacttactactttattacttactacgatttggtgcacttttcaattt-gtccatcata 17331481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 13066862 - 13066915
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttc 104  Q
    ||||| ||||||||||||||||||||  |||  |||| ||||||||||||||||    
T  13066862 acgattaacttactactttattactttatacaatttgttgcacttgtcaatttc 13066915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 24912185 - 24912140
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatt 102  Q
    ||||| ||||||||||||||||| |  |||||||||||||||||||    
T  24912185 aacttgctactttattacttgtttcaatttggtgcacttgtcaatt 24912140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 32022959 - 32023004
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatt 102  Q
    |||||| ||||||||||||||||||| ||| || ||||||||||||    
T  32022959 aacttattactttattacttgttacgatttagtacacttgtcaatt 32023004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 12957559 - 12957620
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  12957559 acgataagcttactactttattacttgttacgatttagtgcacttgtcaatttcgtccatca 12957620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 32240448 - 32240510
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||| |||||| ||||||||    
T  32240448 aacgataaacttactactttattacttgttacaatttggtgcacttgccaattttgtccatca 32240510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 13803149 - 13803097
Alignment:
Q  60 ttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  13803149 ttactattttattacttgttacgatttgatgcacttgtcaatttcgtccatca 13803097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 26853601 - 26853672
Alignment:
Q  41 cctgtgaaaaacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||| | |||||| |||||||||||||||||||||||||| ||||||||| ||  ||||||| |||||||    
T  26853601 cctgtggagaacgatgaacttactactttattacttgttacgatttggtgcattttccaatttcatccatca 26853672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 13305660 - 13305721
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatc 111  Q
    ||||||||||| ||||||||||||||||||||  ||| | ||||||| ||||||||||||||    
T  13305660 aacgataaactaactactttattacttgttacaattttgcgcacttgccaatttcgtccatc 13305721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 28075675 - 28075721
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaattt 103  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||||    
T  28075675 aacttactactttattacttgttacaatttggtgtacttgtcaattt 28075721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 18790068 - 18790109
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtc 98  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  18790068 aacttactactttattacttgatacgatttggtgcacttgtc 18790109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 28900181 - 28900132
Alignment:
Q  62 actactttattacttgttacggtttggtgcacttgtcaatttcgtccatc 111  Q
    ||||||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  28900181 actactttattacttgttacaatttggtgtacttgtcaatttcgttcatc 28900132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 6359202 - 6359254
Alignment:
Q  56 aaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtcc 108  Q
    |||||| ||||||||||| |||||| | ||||||||||||| |||||||||||    
T  6359202 aaacttgctactttattaattgttatgatttggtgcacttgccaatttcgtcc 6359254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 80
Target Start/End: Complemental strand, 13581875 - 13581844
Alignment:
Q  49 aaacgataaacttactactttattacttgtta 80  Q
    ||||||||||||||||||||||||||||||||    
T  13581875 aaacgataaacttactactttattacttgtta 13581844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 16048676 - 16048617
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccat 110  Q
    |||||||||||||||||| |||  |||||||  ||||||||||||  |||||||||||||    
T  16048676 acgataaacttactacttgattgtttgttacattttggtgcactttccaatttcgtccat 16048617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 27117477 - 27117426
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatt 102  Q
    ||||| ||||||||||||||||||||| |||| ||||||||| ||| |||||    
T  27117477 acgattaacttactactttattacttgatacgatttggtgcatttgccaatt 27117426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 23894240 - 23894302
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||| ||| ||| || || ||||  |||||||||||||||||||||||| ||||    
T  23894240 aacgataaacttaataccttaatattttttacaatttggtgcacttgtcaatttcgtctatca 23894302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 13528998 - 13528953
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatt 102  Q
    |||||||||||||||||||| ||| | |||||||||||| ||||||    
T  13528998 aacttactactttattacttattatgatttggtgcacttatcaatt 13528953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 13618537 - 13618492
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatt 102  Q
    |||||||||||||||||||| ||| | |||||||||||| ||||||    
T  13618537 aacttactactttattacttattatgatttggtgcacttatcaatt 13618492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 24121503 - 24121560
Alignment:
Q  53 gataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccat 110  Q
    |||||||||||||||||||||| |  || | |||||||||| || |||||||||||||    
T  24121503 gataaacttactactttattacctcctatgatttggtgcacatgccaatttcgtccat 24121560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 26883495 - 26883552
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatcata 114  Q
    ||||||| |||||| || |||||| | ||||||||||||| |||||| ||||||||||    
T  26883495 aacttacaactttactatttgttatgatttggtgcacttgccaattttgtccatcata 26883552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 1644395 - 1644443
Alignment:
Q  65 actttattacttgttacggtttggtgcacttgtcaatttcgtccatcat 113  Q
    ||||| |||||||||||  ||||||| ||||| ||||||||||||||||    
T  1644395 acttttttacttgttacaatttggtgtacttgccaatttcgtccatcat 1644443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 13782408 - 13782469
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  13782408 acgattaacttactactttattaattgttacgatttggtgcacttgtcaatttcgtccatca 13782469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 13789730 - 13789791
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  13789730 acgattaacttactactttattaattgttacgatttggtgcacttgtcaatttcgtccatca 13789791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 13803985 - 13804046
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  13803985 acgattaacttactactttattaattgttacgatttggtgcacttgtcaatttcgtccatca 13804046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 17859004 - 17858936
Alignment:
Q  45 tgaaaaacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatcat 113  Q
    |||||||||||||||||||||||| ||||||||||||  |||| ||||| |||||||||||||||||||    
T  17859004 tgaaaaacgataaacttactacttaattacttgttactatttgatgcacatgtcaatttcgtccatcat 17858936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 15576191 - 15576253
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||||||    
T  15576191 aacgataaactgactactttattacttgttacgatttgatgcacttgccaatttcgtccatca 15576253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 22727241 - 22727302
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||| ||||||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  22727241 acgataaatttactactttattacttgttacaatttggtgcacttgtcaattttgtccatca 22727302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 13194289 - 13194341
Alignment:
Q  60 ttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  13194289 ttactactttattacttgttacgatttggtgcacttgccaatttcgtccatca 13194341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 6091982 - 6091920
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||| ||||||||||| || ||||| |||  ||||||||||||||||||||||||    
T  6091982 aacgataaactttctactttattattttttacgatttaatgcacttgtcaatttcgtccatca 6091920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 9395481 - 9395432
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaa 100  Q
    |||||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  9395481 acgataaacttactacttcattacttgttacgatttgttgcacttgtcaa 9395432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 6177908 - 6177964
Alignment:
Q  56 aaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||| |||||||||||| |||| |||||||||||||||  |||||||    
T  6177908 aaacttactactttgttacttgttacgatttgatgcacttgtcaatttgatccatca 6177964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 15387166 - 15387209
Alignment:
Q  53 gataaacttactactttattacttgttacggtttggtgcacttg 96  Q
    |||||||||||||||||||| ||||||||| |||||||||||||    
T  15387166 gataaacttactactttattgcttgttacgatttggtgcacttg 15387209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 8037051 - 8037097
Alignment:
Q  55 taaacttactactttattacttgttacggtttggtgcacttgtcaat 101  Q
    |||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  8037051 taaacttactactttattacttgttacgatttagtgcacttgccaat 8037097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 15320088 - 15320130
Alignment:
Q  53 gataaacttactactttattacttgttacggtttggtgcactt 95  Q
    |||||||||||||||||||| ||||||||| ||||||||||||    
T  15320088 gataaacttactactttattgcttgttacgatttggtgcactt 15320130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 11076978 - 11077017
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttg 96  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  11076978 aacttactacttttttacttgttacagtttggtgcacttg 11077017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 17320789 - 17320843
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||| ||||||||||||||| ||||| ||||||||||||| |||||| ||||||||    
T  17320789 aactaactactttattacttattacgatttggtgcacttgccaattt-gtccatca 17320843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 15370729 - 15370771
Alignment:
Q  53 gataaacttactactttattacttgttacggtttggtgcactt 95  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||    
T  15370729 gataaacttactactttattgcttattacgatttggtgcactt 15370771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 16529377 - 16529427
Alignment:
Q  62 actactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||||||||   |||||||||| || |||||||||||||||    
T  16529377 actactttattacttgttataatttggtgcacctgccaatttcgtccatca 16529427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 10323352 - 10323308
Alignment:
Q  48 aaaacgataaacttactactttattacttgttacggtttggtgcac 93  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||||    
T  10323352 aaaacgataa-cttactactttattacttgatacagtttggtgcac 10323308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 13722736 - 13722679
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtcc 108  Q
    ||||||||||||||||||||||  |||||||| |||||| |||||  |||||| ||||    
T  13722736 acgataaacttactactttattgattgttacgatttggtacactttccaatttggtcc 13722679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 15350257 - 15350305
Alignment:
Q  53 gataaacttactactttattacttgttacggtttggtgcacttgtcaat 101  Q
    ||||||||||||| |||||| ||||||||  |||||||||||| |||||    
T  15350257 gataaacttactattttattgcttgttacaatttggtgcacttttcaat 15350305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 16617507 - 16617446
Alignment:
Q  52 cgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatcat 113  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  16617507 cgataaacttactactttattactagttacgatttggtgcacttgtcagtttcgtccatcat 16617446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 20715837 - 20715899
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||||||| ||||||||| ||||  |||||||||||||||||||||||||||||    
T  20715837 aacgataaacttactaccttattacttattacaatttggtgcacttgtcaatttcgtccatca 20715899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 16621531 - 16621468
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatcat 113  Q
    ||||||| |||||||| ||||||||| |||||| |||||||||||||||| |||||||||||||    
T  16621531 aacgatagacttactattttattactagttacgatttggtgcacttgtcagtttcgtccatcat 16621468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 19571050 - 19571113
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatcat 113  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||  ||||| |||||||||    
T  19571050 aacgataaacttactactttattatttgttacgatttggtgcacttgcaaatttagtccatcat 19571113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 11273746 - 11273684
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||| |||||| ||||||||    
T  11273746 aacgataaacttactactttattacttgttacaatttgatgcacttgccaattttgtccatca 11273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 18451123 - 18451061
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||| |||||||||||||||||| | |||| |||||| |||||||||||||||    
T  18451123 aacgataaacttacaactttattacttgttacgatctggtccacttgccaatttcgtccatca 18451061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 17768641 - 17768712
Alignment:
Q  41 cctgtgaaaaacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||| | ||| ||||||||||||||||||||||| ||||| ||||||  ||||| |||||||||||||||    
T  17768641 cctgtggagaacaataaacttactactttattacttcttacgatttggtttacttgccaatttcgtccatca 17768712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 24518959 - 24519018
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatcataga 116  Q
    |||||||||||||||||||||||||| |||| | |||||| || ||||||||||||||||    
T  24518959 aacttactactttattacttgttacgatttgatacacttgccagtttcgtccatcataga 24519018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 25682149 - 25682207
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtcc 108  Q
    ||||||||| |||||| |||||||||||||||| ||| ||||||||| |||||||||||    
T  25682149 aacgataaaattactattttattacttgttacgatttagtgcacttgccaatttcgtcc 25682207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 26502073 - 26502028
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttg 96  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  26502073 acgataaacatactactttattacttgttacagtttggtgcacttg 26502028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 17029270 - 17029325
Alignment:
Q  54 ataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtcca 109  Q
    ||||| |||||| |||||| ||||||||| ||||||||||||| ||||||||||||    
T  17029270 ataaaattactattttatttcttgttacgatttggtgcacttgccaatttcgtcca 17029325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 26327921 - 26327873
Alignment:
Q  64 tactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||||||||  | ||||||||||||||||||||| |||||    
T  26327921 tactttattacttgttaccatgtggtgcacttgtcaatttcgttcatca 26327873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 29196531 - 29196468
Alignment:
Q  50 aacgataaacttactactttattacttgttacggttt-ggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||| ||||||||||||  ||||||| ||| |||||||||| ||||||||| |||||    
T  29196531 aacgataaactaactactttattatgtgttacgattttggtgcacttgccaatttcgttcatca 29196468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 37899112 - 37899059
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccat 110  Q
    |||||||| ||||| |||||||| || ||||||||||||| || ||||||||||    
T  37899112 aacttacttctttactacttgttgcgatttggtgcacttgccagtttcgtccat 37899059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 24842959 - 24843015
Alignment:
Q  54 ataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccat 110  Q
    ||||||||||||||||||||||||||| | ||| ||  ||||| | |||||||||||    
T  24842959 ataaacttactactttattacttgttatgatttagtaaacttgcccatttcgtccat 24843015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 41256271 - 41256208
Alignment:
Q  50 aacgataaacttact-actttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  41256271 aacgataaacttacttactttattatttgttacgatttggtgcacttgtcaatttcgtccatca 41256208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 31000609 - 31000668
Alignment:
Q  53 gataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||||||||||||||||||  |||| ||||||||  ||||||||||||||    
T  31000609 gataaacttactactttattacttgttacaatttgatgcacttgcaaatttcgtccatca 31000668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 28455185 - 28455128
Alignment:
Q  54 ataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatc 111  Q
    ||||||||||||||||| ||||||||| | ||||||| ||||| ||||||||||||||    
T  28455185 ataaacttactactttaatacttgttatgatttggtgtacttgccaatttcgtccatc 28455128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 4112299 - 4112337
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcactt 95  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  4112299 aacttactactttattacttgctacggtttggtgcactt 4112337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 17496040 - 17495995
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatt 102  Q
    ||||||||||| ||||||||||| || |||||||||||||||||||    
T  17496040 aacttactactatattacttgttccgatttggtgcacttgtcaatt 17495995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 23854096 - 23854055
Alignment:
Q  60 ttactactttattacttgttacggtttggtgcacttgtcaat 101  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  23854096 ttactactttattacttgttatgatttggtgcacttgtcaat 23854055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 27416124 - 27416083
Alignment:
Q  71 ttacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  27416124 ttacttgttacgatttggtgcaattgtcaatttcgtccatca 27416083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 30477766 - 30477717
Alignment:
Q  45 tgaaaaacgataaacttactactttattacttgttacggtttggtgcact 94  Q
    |||| |||||||||||||||||||||||| || ||||| |||||||||||    
T  30477766 tgaagaacgataaacttactactttattatttattacgatttggtgcact 30477717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 19593276 - 19593315
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtg 90  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  19593276 acgataaacttacaactttattacttgttacgatttggtg 19593315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 31275304 - 31275351
Alignment:
Q  57 aacttactactttattacttg-ttacggtttggtgcacttgtcaattt 103  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  31275304 aacttactactttattacttgtttacgatttggtgcacttgccaattt 31275351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 32138799 - 32138742
Alignment:
Q  53 gataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatc 111  Q
    |||||||||||||||||||| ||||||| || ||   ||||||||||||||||||||||    
T  32138799 gataaacttactactttattgcttgtta-ggattttagcacttgtcaatttcgtccatc 32138742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 9516529 - 9516593
Alignment:
Q  51 acgataaacttactac-tttattacttgttacggtttggtgcacttgtcaatttcgtccatcata 114  Q
    |||||||||||||||| ||| |||| ||||||  |||| |||||||| |||||| ||||||||||    
T  9516529 acgataaacttactacattttttacgtgttacaatttgatgcacttgccaattttgtccatcata 9516593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 21503442 - 21503386
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtc 107  Q
    ||||||||||||||||||||||| ||||| |  |||| | |||||| ||||||||||    
T  21503442 acgataaacttactactttattatttgtttcaatttgctacacttgccaatttcgtc 21503386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 24318797 - 24318745
Alignment:
Q  60 ttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||| |||||||| |||||||  ||||||||||||  |||||||||||||||    
T  24318797 ttacttctttattaattgttacaatttggtgcactttccaatttcgtccatca 24318745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 25475255 - 25475319
Alignment:
Q  48 aaaacgata-aacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatc 111  Q
    ||||||||| |||||||||||||| | |||||||   ||||||||||||| ||||||| ||||||    
T  25475255 aaaacgatacaacttactactttactgcttgttatattttggtgcacttgccaatttcttccatc 25475319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 35709006 - 35709078
Alignment:
Q  41 cctgtgaaaaacgata-aacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||| ||||||||| ||||| |||||||| | |||| | || ||||||||||||  |||||||||||||||    
T  35709006 cctgtggaaaacgatacaacttgctactttactgcttgcttcgatttggtgcacttaacaatttcgtccatca 35709078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 7592 - 7536
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtc 107  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  7592 acgataaacttactactttattacttgttatgatttggtgcacttgtcgatttcgtc 7536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 10614 - 10553
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||| || |||||| ||||||||||||| | |||||||||||||||||||||||||||||    
T  10614 acgatatacctactacattattacttgttatgatttggtgcacttgtcaatttcgtccatca 10553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 33913459 - 33913400
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtcca 109  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  33913459 aacgataaatttactactttattacttgttacaatttggtgcacttgccaatttcgtcca 33913400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 25918147 - 25918086
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||  |||||||    
T  25918147 acgataaacttactacgttattacttgttacaatttggtgcacttgtcaattttttccatca 25918086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 10343007 - 10343064
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtc 107  Q
    |||||||||||||||| ||||||||| |||||| ||| |||||||||  |||||||||    
T  10343007 aacgataaacttactattttattactcgttacgattttgtgcacttgctaatttcgtc 10343064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 14419353 - 14419398
Alignment:
Q  67 tttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||||| ||||||||||||| |||||||||| ||||    
T  14419353 tttattacttgttacgatttggtgcacttgccaatttcgtctatca 14419398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 8839674 - 8839717
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaa 100  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||    
T  8839674 aacttactactttattacttattacgttttgatgcacttgtcaa 8839717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 16977460 - 16977519
Alignment:
Q  53 gataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    ||||||||||||| ||||||||||||| |  |||||| |||||| |||||||| ||||||    
T  16977460 gataaacttactagtttattacttgttccaatttggtacacttgccaatttcgaccatca 16977519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 2728509 - 2728447
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatca 112  Q
    |||||||||||||||||||| ||  |||||||| ||||||||| ||| | |||| ||||||||    
T  2728509 aacgataaacttactactttgtttattgttacgatttggtgcatttgcccattttgtccatca 2728447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 5631558 - 5631505
Alignment:
Q  51 acgataaacttactactttattacttgttacggtttggtgcacttgtcaatttc 104  Q
    ||||| || |||||| ||||||||||| |||| |||||||||||||| ||||||    
T  5631558 acgattaaattactaatttattacttggtacgatttggtgcacttgtaaatttc 5631505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 14541128 - 14541072
Alignment:
Q  57 aacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccatcat 113  Q
    ||||||||| |||||||||| |||   ||||||| ||||| ||||||||||||||||    
T  14541128 aacttactattttattacttattattatttggtgtacttgccaatttcgtccatcat 14541072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 27416366 - 27416402
Alignment:
Q  45 tgaaaaacgataaacttactactttattacttgttac 81  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  27416366 tgaaaaacaataaatttactactttattacttgttac 27416402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 9959 - 10021
Alignment:
Q  48 aaaacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccat 110  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||| |||||    
T  9959 aaaacgataaatttactactttattacttgttacgatttggtgcatttgccaatttcatccat 10021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 36550 - 36494
Alignment:
Q  54 ataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgtccat 110  Q
    ||||||||||||||||||||||||||  | ||||||||||||| |||||||||||||    
T  36550 ataaacttactactttattacttgttgtgatttggtgcacttgccaatttcgtccat 36494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 2077 - 2021
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgt 106  Q
    ||||||||| ||||||||||| || |||||||| ||||||||||||| |||||||||    
T  2077 aacgataaatttactactttaatatttgttacgatttggtgcacttgccaatttcgt 2021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 2242 - 2186
Alignment:
Q  50 aacgataaacttactactttattacttgttacggtttggtgcacttgtcaatttcgt 106  Q
    ||||||||| ||||||||||| || |||||||| ||||||||||||| |||||||||    
T  2242 aacgataaatttactactttaatatttgttacgatttggtgcacttgccaatttcgt 2186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 27394 - 27356
Alignment:
Q  53 gataaacttactactttattacttgttacggtttggtgc 91  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  27394 gataaacttactaccttattacttgttacagtttggtgc 27356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 78607 - 78562
Alignment:
Q  67 tttattacttgttacggtttggtgcacttgtcaatttcgtccatcat 113  Q
    |||| ||||||||||| |||||||||||||||||||| |||||||||    
T  78607 tttactacttgttacgatttggtgcacttgtcaattt-gtccatcat 78562  T

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