View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_30 (Length: 397)
Name: NF1148_low_30
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 122 - 299
Target Start/End: Original strand, 43128746 - 43128924
Alignment:
| Q |
122 |
atcctcttcaacacaatcttagttgttgaactaatataactatcacgaagtaaattatacctagaagacatgtagacaacaaattgctctgttaggtctt |
221 |
Q |
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| T |
43128746 |
atcctcttcaacacaatcttagttgttgaactaatataactatcacgaagtaaattatacctagaagacatgtagacaacaaattgtgcttttaggtctt |
43128845 |
T |
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| Q |
222 |
ttggatgaaagtttttactatgct-tagtgaaagtttaattgttttcactaaccaattttcctttggtggagctcaagt |
299 |
Q |
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| T |
43128846 |
tttgatgaaagtttttacgatgttgtagtgaaagtttaattgttttcactaaccaattctcctttggtggagctcaagt |
43128924 |
T |
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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 48258540 - 48258628
Alignment:
| Q |
26 |
aaactggctataaagcatcgaagagtggcatcatagaggtgacaaaaagatttggaagaaattatggaatctccacactatacctaagcac |
116 |
Q |
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| T |
48258540 |
aaactggctataaagcatcgaagagt--catcatagaggtgacaaaaagatttggaagaaattatggaatctccacactatacctaagcac |
48258628 |
T |
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