View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_31 (Length: 395)
Name: NF1148_low_31
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 40534715 - 40534547
Alignment:
| Q |
37 |
agctcctccgttcaccttcttttccttactccttttcttaccaccatattggaccttcaaattcttcctttccattatctttacattcttccctgaaaat |
136 |
Q |
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| T |
40534715 |
agctcctccattcaccttcttttccttactccttttcttaccaccatattggaccttcaaattcttcctttccattatctttgcattcttccctgaaaat |
40534616 |
T |
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| Q |
137 |
gttgctggtaaagttgttcacataactggtgcttcctctggtattggagaggtaattcatatactactc |
205 |
Q |
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| T |
40534615 |
gtcgctggtaaagttgttcacatcactggtgcttcctctggtattggagaggtaattcatatactactc |
40534547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 261 - 386
Target Start/End: Complemental strand, 40534498 - 40534373
Alignment:
| Q |
261 |
tttttatagcatttggcttacgagtatgctaagagaggtgcacgattagcactttctgctagaagagacacagcactgcgtgaagttgctgatagagctc |
360 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40534498 |
tttttgtagcatttggcttacgagtatgctaagagaggtgcacgattagcactttctgctagaagagacacagcactgcgtgaagttgctgatagagctc |
40534399 |
T |
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| Q |
361 |
gtgattgtggttcccctgatattatt |
386 |
Q |
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| T |
40534398 |
gtgattgtggttcccctgatgttatt |
40534373 |
T |
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