View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1148_low_32 (Length: 390)

Name: NF1148_low_32
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1148_low_32
NF1148_low_32
[»] chr8 (15 HSPs)
chr8 (263-375)||(15004547-15004659)
chr8 (263-375)||(22354239-22354351)
chr8 (263-375)||(22342579-22342691)
chr8 (91-200)||(22342415-22342524)
chr8 (86-200)||(15004714-15004828)
chr8 (86-133)||(9995307-9995354)
chr8 (86-135)||(43801112-43801161)
chr8 (83-139)||(31627562-31627617)
chr8 (86-137)||(30232864-30232915)
chr8 (86-129)||(36701203-36701246)
chr8 (89-139)||(13248676-13248726)
chr8 (86-193)||(33365014-33365120)
chr8 (86-139)||(24616860-24616913)
chr8 (84-120)||(14051076-14051112)
chr8 (85-133)||(39921340-39921387)
[»] chr3 (14 HSPs)
chr3 (263-375)||(44270180-44270292)
chr3 (263-375)||(1672198-1672310)
chr3 (86-200)||(44273591-44273705)
chr3 (86-200)||(1668776-1668890)
chr3 (89-139)||(11342445-11342495)
chr3 (85-139)||(4774490-4774543)
chr3 (89-138)||(37735160-37735209)
chr3 (86-139)||(52965197-52965250)
chr3 (80-111)||(45325757-45325788)
chr3 (86-193)||(39085348-39085454)
chr3 (86-139)||(12026239-12026291)
chr3 (87-144)||(28700394-28700451)
chr3 (86-139)||(53592968-53593020)
chr3 (87-135)||(46551678-46551726)
[»] chr4 (7 HSPs)
chr4 (263-375)||(26071392-26071504)
chr4 (86-200)||(26074818-26074932)
chr4 (86-139)||(33616135-33616188)
chr4 (85-139)||(35671033-35671087)
chr4 (86-135)||(26687784-26687833)
chr4 (86-135)||(24221263-24221312)
chr4 (87-139)||(39068050-39068102)
[»] chr7 (6 HSPs)
chr7 (263-375)||(10461197-10461310)
chr7 (86-200)||(10461023-10461142)
chr7 (85-200)||(13071671-13071787)
chr7 (86-139)||(26626028-26626081)
chr7 (87-139)||(44523895-44523947)
chr7 (86-139)||(33438500-33438552)
[»] chr6 (7 HSPs)
chr6 (34-85)||(2264441-2264492)
chr6 (87-139)||(24495743-24495795)
chr6 (86-193)||(8770545-8770651)
chr6 (86-135)||(9606518-9606567)
chr6 (85-139)||(35165971-35166025)
chr6 (86-139)||(4151466-4151519)
chr6 (83-139)||(24261865-24261921)
[»] chr2 (9 HSPs)
chr2 (86-139)||(5703186-5703239)
chr2 (86-139)||(13369239-13369292)
chr2 (86-139)||(17205701-17205754)
chr2 (86-139)||(14793877-14793930)
chr2 (86-139)||(22417120-22417172)
chr2 (81-139)||(5533255-5533313)
chr2 (96-134)||(20463946-20463984)
chr2 (85-139)||(24934993-24935047)
chr2 (85-139)||(25683685-25683739)
[»] chr1 (11 HSPs)
chr1 (84-139)||(32829979-32830034)
chr1 (86-139)||(19263546-19263599)
chr1 (86-133)||(28251516-28251563)
chr1 (86-139)||(8059029-8059081)
chr1 (86-139)||(14949481-14949534)
chr1 (86-133)||(14190494-14190541)
chr1 (85-193)||(51251235-51251343)
chr1 (86-193)||(31200556-31200662)
chr1 (86-139)||(14939465-14939518)
chr1 (86-139)||(14944709-14944762)
chr1 (86-139)||(28882494-28882547)
[»] chr5 (5 HSPs)
chr5 (86-139)||(40484960-40485012)
chr5 (84-135)||(4421846-4421897)
chr5 (86-123)||(14634728-14634765)
chr5 (86-139)||(23927823-23927875)
chr5 (90-135)||(34490640-34490685)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 263 - 375
Target Start/End: Complemental strand, 15004659 - 15004547
Alignment:
Q  263 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagaatcttttcttgttatgttttggg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15004659 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagactcttttcttgttatgttttggg 15004560  T
Q  363 ctcttttttgtat 375  Q
    |||||||||||||    
T  15004559 ctcttttttgtat 15004547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 263 - 375
Target Start/End: Original strand, 22354239 - 22354351
Alignment:
Q  263 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagaatcttttcttgttatgttttggg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22354239 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagactcttttcttgttatgttttggg 22354338  T
Q  363 ctcttttttgtat 375  Q
    |||||||||||||    
T  22354339 ctcttttttgtat 22354351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 263 - 375
Target Start/End: Original strand, 22342579 - 22342691
Alignment:
Q  263 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagaatcttttcttgttatgttttggg 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  22342579 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaattttaatgatgacatcaagactcttttcttgttatgttttggg 22342678  T
Q  363 ctcttttttgtat 375  Q
    |||||||||||||    
T  22342679 ctcttttttgtat 22342691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 22342415 - 22342524
Alignment:
Q  91 gtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggttttaa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  22342415 gtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccaaaaaaacgggttgggtcgggtaaatgggtgaatgtggttttaa 22342514  T
Q  191 aaattgatat 200  Q
    ||||||||||    
T  22342515 aaattgatat 22342524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 15004828 - 15004714
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggt 185  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||    
T  15004828 taggggtgtacatgggttgggtcaacccggaaaaccaggtcaaacccacctaaagaaaaccaaaaaaacgggttgggtcgggtaaatgggtgaatgtggt 15004729  T
Q  186 tttaaaaattgatat 200  Q
    |||||||||||||||    
T  15004728 tttaaaaattgatat 15004714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 9995354 - 9995307
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaaccca 133  Q
    |||| |||| |||||||||||||||||| |||||||||||||||||||    
T  9995354 taggagtgttcatgggttgggtcaacccagaaaacccggtcaaaccca 9995307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 43801161 - 43801112
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 135  Q
    ||||||||| ||||||||||| ||||||  ||||||||||||||||||||    
T  43801161 taggggtgttcatgggttgggccaacccaaaaaacccggtcaaacccacc 43801112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 31627562 - 31627617
Alignment:
Q  83 aattaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||||||||||||||||||||||| |||||  |||||||  |||||||||||||||    
T  31627562 aattaggggtgtacatgggttgggtaaacccaaaaaaccc-atcaaacccacccaaa 31627617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 30232864 - 30232915
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccaccca 137  Q
    ||||||| ||||| ||||||||||||||| |||||| |||||||| ||||||    
T  30232864 taggggtatacataggttgggtcaacccgaaaaacctggtcaaactcaccca 30232915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 36701246 - 36701203
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaa 129  Q
    ||||||||||||||||||||||||||  | ||||||||||||||    
T  36701246 taggggtgtacatgggttgggtcaacatgtaaaacccggtcaaa 36701203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 13248726 - 13248676
Alignment:
Q  89 gggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||| |||||||||||| ||||| ||||||||  |||||||||||||||    
T  13248726 gggtgttcatgggttgggtaaacccagaaaacccaatcaaacccacccaaa 13248676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 33365014 - 33365120
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggt 185  Q
    |||||||||||||||||||||| |||||  ||||||| |||||||||| ||||| ||| ||        ||||||||| |||| | |||||| || ||||    
T  33365014 taggggtgtacatgggttgggtaaacccaaaaaaccc-gtcaaacccatccaaaaaaatccaaaaaagtgggttgggttgggtgattgggtggatatggt 33365112  T
Q  186 tttaaaaa 193  Q
    ||||||||    
T  33365113 tttaaaaa 33365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 24616860 - 24616913
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||| |||| |||||||||||||||||| ||||||| ||||||| ||| |||||    
T  24616860 taggagtgttcatgggttgggtcaacccagaaaacctggtcaaatccatccaaa 24616913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 14051112 - 14051076
Alignment:
Q  84 attaggggtgtacatgggttgggtcaacccggaaaac 120  Q
    |||||||||||||||| |||||||||||||| |||||    
T  14051112 attaggggtgtacatgagttgggtcaacccgaaaaac 14051076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 39921387 - 39921340
Alignment:
Q  85 ttaggggtgtacatgggttgggtcaacccggaaaacccggtcaaaccca 133  Q
    |||||||||| ||||||||||||||||||  ||||||| ||||||||||    
T  39921387 ttaggggtgttcatgggttgggtcaacccaaaaaaccc-gtcaaaccca 39921340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 263 - 375
Target Start/End: Complemental strand, 44270292 - 44270180
Alignment:
Q  263 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagaatcttttcttgttatgttttggg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44270292 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagactcttttcttgttatgttttggg 44270193  T
Q  363 ctcttttttgtat 375  Q
    |||||||||||||    
T  44270192 ctcttttttgtat 44270180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 263 - 375
Target Start/End: Original strand, 1672198 - 1672310
Alignment:
Q  263 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagaatcttttcttgttatgttttggg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  1672198 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagactcgtttcttgttatgttttggg 1672297  T
Q  363 ctcttttttgtat 375  Q
    |||||||||||||    
T  1672298 ctcttttttgtat 1672310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 44273705 - 44273591
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||||||||||    
T  44273705 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccaaaaaaatgggttgggccgggtaaatgggtgaatgtggt 44273606  T
Q  186 tttaaaaattgatat 200  Q
    |||||||||||||||    
T  44273605 tttaaaaattgatat 44273591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 1668776 - 1668890
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggt 185  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||||||||||    
T  1668776 taggggtgtacatgggttgggttaatccggaaaacccggtcaaacccacccaaagaaaaccaaaaaaatgggttgggccgggtaaatgggtgaatgtggt 1668875  T
Q  186 tttaaaaattgatat 200  Q
    |||||||||||||||    
T  1668876 tttaaaaattgatat 1668890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 11342445 - 11342495
Alignment:
Q  89 gggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||||    
T  11342445 gggtgtacatgggttgggtcaaaccggaaaacttggtcaaacccacccaaa 11342495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 4774543 - 4774490
Alignment:
Q  85 ttaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||||||||||||||||||||| |||||  ||||||| ||||||||||||||||    
T  4774543 ttaggggtgtacatgggttgggtaaacccaaaaaaccc-gtcaaacccacccaaa 4774490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 37735160 - 37735209
Alignment:
Q  89 gggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaa 138  Q
    |||||| |||||||||||||||||| ||||| | ||||||||||||||||    
T  37735160 gggtgttcatgggttgggtcaacccagaaaatctggtcaaacccacccaa 37735209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 52965197 - 52965250
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||| |||| |||||||||||||||||  ||||| |||||||||||||||||||    
T  52965197 taggagtgttcatgggttgggtcaacctagaaaatccggtcaaacccacccaaa 52965250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 111
Target Start/End: Original strand, 45325757 - 45325788
Alignment:
Q  80 caaaattaggggtgtacatgggttgggtcaac 111  Q
    ||||||||||||||||||||||||||||||||    
T  45325757 caaaattaggggtgtacatgggttgggtcaac 45325788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 39085454 - 39085348
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggt 185  Q
    |||||||||||||||||||||| |||||  ||||||| |||||||||| ||||| ||| ||        ||||||||| |||| | |||||| || ||||    
T  39085454 taggggtgtacatgggttgggtaaacccaaaaaaccc-gtcaaacccatccaaaaaaacccaaaaaagtgggttgggttgggtgattgggtggatatggt 39085356  T
Q  186 tttaaaaa 193  Q
    ||||||||    
T  39085355 tttaaaaa 39085348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 12026291 - 12026239
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||||||||||||||||||| |||||  |||| || ||||||||||||||||    
T  12026291 taggggtgtacatgggttgggtaaacccaaaaaaacc-gtcaaacccacccaaa 12026239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 28700451 - 28700394
Alignment:
Q  87 aggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaa 144  Q
    |||||| | ||| ||||||||||||||| ||||||||||||||| || ||||| ||||    
T  28700451 aggggtatgcataggttgggtcaacccgaaaaacccggtcaaactcatccaaaaaaaa 28700394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 53593020 - 53592968
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||||||| ||||||||||||||||||  |||| || ||||||||||||||||    
T  53593020 taggggtgttcatgggttgggtcaacccaaaaaaacc-gtcaaacccacccaaa 53592968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 46551678 - 46551726
Alignment:
Q  87 aggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 135  Q
    |||||||| ||||||||||||||| || |||||| |||||||| |||||    
T  46551678 aggggtgttcatgggttgggtcaatccagaaaactcggtcaaatccacc 46551726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 263 - 375
Target Start/End: Complemental strand, 26071504 - 26071392
Alignment:
Q  263 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagaatcttttcttgttatgttttggg 362  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26071504 ttggtggagatggagaatataaacgatgaagtcaagactcttttgaattgtggggaatgttaatgatgacatcaagactcttttcttgttatgttttggg 26071405  T
Q  363 ctcttttttgtat 375  Q
    |||||||||||||    
T  26071404 ctcttttttgtat 26071392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 26074932 - 26074818
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggt 185  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||        |||||||| ||||||||||||||||||||||    
T  26074932 taggggtgtacatgggttgggtcaacccgaaaaatccggtcaaacccacccaaagaaaaccaaaaaaatgggttgggccgggtaaatgggtgaatgtggt 26074833  T
Q  186 tttaaaaattgatat 200  Q
    |||||||||||||||    
T  26074832 tttaaaaattgatat 26074818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 33616188 - 33616135
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  33616188 taggggtgttcatgggttgggtcaacccaaaaaacccggtcaaacccacccaaa 33616135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 35671087 - 35671033
Alignment:
Q  85 ttaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||||||| |||||||||||||||||  ||||||||| |||||||||||||||    
T  35671087 ttaggggtgttcatgggttgggtcaacctagaaaacccgatcaaacccacccaaa 35671033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 26687784 - 26687833
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 135  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| ||||    
T  26687784 taggggtgttcatgggttgggtcaacccagaaaacccggtcaaactcacc 26687833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 24221263 - 24221312
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 135  Q
    ||||||||| ||||||||||||||||||  ||||| ||||||||||||||    
T  24221263 taggggtgttcatgggttgggtcaacccacaaaactcggtcaaacccacc 24221312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 39068050 - 39068102
Alignment:
Q  87 aggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||||| |||||||||||||||| | ||||| |||||||||||||| ||||    
T  39068050 aggggtgttcatgggttgggtcaactcagaaaatccggtcaaacccactcaaa 39068102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 263 - 375
Target Start/End: Original strand, 10461197 - 10461310
Alignment:
Q  263 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagaatc-ttttcttgttatgttttgg 361  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  10461197 ttggtggagatggagaatataaacgatgaagtcatgactcttttgaattgtggggaatgttaatgatgacatcaagactctttttcttgttatgttttgg 10461296  T
Q  362 gctcttttttgtat 375  Q
    ||||||||||||||    
T  10461297 gctcttttttgtat 10461310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 10461023 - 10461142
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnnc-----gggttgggtcgggtaaatgggtgaat 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |     ||||||||||||||||||||||| ||    
T  10461023 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccaaaaaaacgggttgggttgggtcgggtaaatgggtgcat 10461122  T
Q  181 gtggttttaaaaattgatat 200  Q
    ||||||||||||||||||||    
T  10461123 gtggttttaaaaattgatat 10461142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 13071787 - 13071671
Alignment:
Q  85 ttaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaa-ccnnnnnnncgggttgggtcgggtaaatgggtgaatgtg 183  Q
    |||||||||||||||||||||||||| ||| |||||||  ||||||||||  ||| |||| ||       ||||||||  ||||||||||||||||||||    
T  13071787 ttaggggtgtacatgggttgggtcaatccgaaaaaccccatcaaacccacaaaaaaaaaaaccaaaaaaacgggttggaccgggtaaatgggtgaatgtg 13071688  T
Q  184 gttttaaaaattgatat 200  Q
    ||||||||||| |||||    
T  13071687 gttttaaaaatcgatat 13071671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 26626081 - 26626028
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||||||  |||||||||||||||||  ||||||||||||||||||||||||    
T  26626081 taggggtgtttatgggttgggtcaacccaaaaaacccggtcaaacccacccaaa 26626028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 44523895 - 44523947
Alignment:
Q  87 aggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||||| || ||||||||||||||| |||||||||||||||  ||||||||    
T  44523895 aggggtgttcacgggttgggtcaacccagaaaacccggtcaaattcacccaaa 44523947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 33438500 - 33438552
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||||||||||||||||||| |||||  ||||||| |||||||||| |||||    
T  33438500 taggggtgtacatgggttgggtaaacccaaaaaaccc-gtcaaacccatccaaa 33438552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 2264441 - 2264492
Alignment:
Q  34 gatgcatcatgtgcacgtcactcttggtactaaacttttttatagacaaaat 85  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  2264441 gatgcatcatgtgcatgtcactcttggtaataaacttttttatagacaaaat 2264492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 24495743 - 24495795
Alignment:
Q  87 aggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||||| ||||||||||||| |||| ||||||| |||||||||||||||||    
T  24495743 aggggtgttcatgggttgggtcgacccagaaaacctggtcaaacccacccaaa 24495795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 8770651 - 8770545
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggt 185  Q
    |||||||||||||||||||||| |||||  ||||||| |||||||||||||||| ||| ||        ||||||||| |||| | |||||| || ||||    
T  8770651 taggggtgtacatgggttgggtaaacccaaaaaaccc-gtcaaacccacccaaaaaaacccaaaaaagtgggttgggttgggtgattgggtggatatggt 8770553  T
Q  186 tttaaaaa 193  Q
    ||||||||    
T  8770552 tttaaaaa 8770545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 9606567 - 9606518
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 135  Q
    ||||||||| |||||||||||||||||  |||||| ||||||||||||||    
T  9606567 taggggtgttcatgggttgggtcaacctagaaaactcggtcaaacccacc 9606518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 35166025 - 35165971
Alignment:
Q  85 ttaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||| |||| ||| ||||||||||||||  |||||||| |||||||||||||||    
T  35166025 ttaggtgtgttcattggttgggtcaacccaaaaaacccgatcaaacccacccaaa 35165971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 4151519 - 4151466
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||||||||||||||||||||||||||  |||| || || ||||||| |||||    
T  4151519 taggggtgtacatgggttgggtcaacccaaaaaatcccgtaaaacccatccaaa 4151466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 24261921 - 24261865
Alignment:
Q  83 aattaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||||||||||| ||| |||||||||||||  ||||   |||||||||||||||||    
T  24261921 aattaggggtgtatatgagttgggtcaacccaaaaaatttggtcaaacccacccaaa 24261865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 5703239 - 5703186
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  5703239 taggggtgttcatgggttgggtcaacccagaaaacccggtcaaatccacccaaa 5703186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 13369239 - 13369292
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||| |||||||    
T  13369239 taggggtgttcatgggttgggtcaacccagaaaacccggtcaaacctacccaaa 13369292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 17205701 - 17205754
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||    
T  17205701 taggggtgttcatgggttgggtcaacccagaaaatccgatcaaacccacccaaa 17205754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 14793930 - 14793877
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||||||||||||||||||||||||||  ||||  | ||||||||||||||||    
T  14793930 taggggtgtacatgggttgggtcaacccaaaaaatacagtcaaacccacccaaa 14793877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 22417172 - 22417120
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||||||||||||||||||| |||||  ||||||| ||||||||||||||||    
T  22417172 taggggtgtacatgggttgggtaaacccaaaaaaccc-gtcaaacccacccaaa 22417120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 5533255 - 5533313
Alignment:
Q  81 aaaattaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||| |||||||| | |||||||||||||||||  |||||| ||||||| |||||||||    
T  5533255 aaaactaggggtggatatgggttgggtcaacccataaaacctggtcaaatccacccaaa 5533313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 20463946 - 20463984
Alignment:
Q  96 catgggttgggtcaacccggaaaacccggtcaaacccac 134  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  20463946 catgggttgggtcaacccagaaaatccggtcaaacccac 20463984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 24934993 - 24935047
Alignment:
Q  85 ttaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||| |||| ||| ||||||||||||||  |||||||| |||||||||||||||    
T  24934993 ttaggtgtgttcattggttgggtcaacccataaaacccgatcaaacccacccaaa 24935047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 25683685 - 25683739
Alignment:
Q  85 ttaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||| |||| ||| ||||||||||||||  |||||||| |||||||||||||||    
T  25683685 ttaggtgtgttcattggttgggtcaacccaaaaaacccgatcaaacccacccaaa 25683739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 32830034 - 32829979
Alignment:
Q  84 attaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||||||| | |||||||||||||||||| ||||| |||||||||||||||||||    
T  32830034 attaggggtattcatgggttgggtcaacccagaaaatccggtcaaacccacccaaa 32829979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 19263546 - 19263599
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||||||| ||||||||||||||| || ||||||||||| |||||||||||||    
T  19263546 taggggtgtccatgggttgggtcaatccagaaaacccggttaaacccacccaaa 19263599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 28251563 - 28251516
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaaccca 133  Q
    |||| |||| |||||||||||||||||| |||||||||||||||||||    
T  28251563 taggagtgttcatgggttgggtcaacccagaaaacccggtcaaaccca 28251516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 8059029 - 8059081
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||||||||||||||||||| |||||  ||||||| ||||||||||||||||    
T  8059029 taggggtgtacatgggttgggtaaacccaaaaaaccc-gtcaaacccacccaaa 8059081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 14949481 - 14949534
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||||||  ||||||||||||||||| |||||||||  ||||||||||||||    
T  14949481 taggggtgtttatgggttgggtcaacccagaaaacccgagcaaacccacccaaa 14949534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 14190541 - 14190494
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaaccca 133  Q
    ||||||||| ||||||||||||||||||  ||| ||||||||||||||    
T  14190541 taggggtgttcatgggttgggtcaacccaaaaaccccggtcaaaccca 14190494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 51251343 - 51251235
Alignment:
Q  85 ttaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtgg 184  Q
    ||||||||||||||||||||||| |||||  |||| ||  ||||||||||||||| ||| ||        ||||||||| |||| | |||||| || |||    
T  51251343 ttaggggtgtacatgggttgggtaaacccaaaaaaacccatcaaacccacccaaaaaaacccaaaaaagtgggttgggttgggtgattgggtggatatgg 51251244  T
Q  185 ttttaaaaa 193  Q
    |||||||||    
T  51251243 ttttaaaaa 51251235  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 31200662 - 31200556
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggt 185  Q
    |||||||||||||||||||||| |||||  |||| || |||||||||||||||| ||| ||        ||||||||| |||| | |||||| || ||||    
T  31200662 taggggtgtacatgggttgggtaaaccc-aaaaaacctgtcaaacccacccaaaaaaacccaaaaaagtgggttgggttgggtgattgggtggatatggt 31200564  T
Q  186 tttaaaaa 193  Q
    ||||||||    
T  31200563 tttaaaaa 31200556  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 14939465 - 14939518
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||||||  ||||||||||||||||  ||||| ||| |||||||||||||||    
T  14939465 taggggtgtttatgggttgggtcaacctagaaaatccgatcaaacccacccaaa 14939518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 14944709 - 14944762
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||||||  ||||||||||||||||  ||||| ||| |||||||||||||||    
T  14944709 taggggtgtttatgggttgggtcaacctagaaaatccgatcaaacccacccaaa 14944762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 28882547 - 28882494
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||||||| |||| ||||| ||||||| | |||| ||||||||||||||||||    
T  28882547 taggggtgttcatgtgttggatcaacccagcaaacgcggtcaaacccacccaaa 28882494  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 40485012 - 40484960
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  40485012 taggggtgtacatgggttgggtcaacccaaaaaaccc-gtcaaacccacccaaa 40484960  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 4421897 - 4421846
Alignment:
Q  84 attaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 135  Q
    ||||||||||| |||||||||||||||| | ||||| |||||||||||||||    
T  4421897 attaggggtgttcatgggttgggtcaactcagaaaatccggtcaaacccacc 4421846  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 14634765 - 14634728
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccg 123  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  14634765 taggggtgtacatgggttgggtcaacctgaaaaacccg 14634728  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 23927823 - 23927875
Alignment:
Q  86 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 139  Q
    |||||||||||||||||||||| || ||  ||||||| ||||||||||||||||    
T  23927823 taggggtgtacatgggttgggtaaatccaaaaaaccc-gtcaaacccacccaaa 23927875  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 34490640 - 34490685
Alignment:
Q  90 ggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 135  Q
    ||||| ||| |||||||||||||||| |||||| ||||||||||||    
T  34490640 ggtgtgcataggttgggtcaacccggtaaacccagtcaaacccacc 34490685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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