View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_33 (Length: 382)
Name: NF1148_low_33
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 182 - 353
Target Start/End: Complemental strand, 23036590 - 23036416
Alignment:
| Q |
182 |
gggttcatattaaaatacgttttttgtgacatttttaatataaacaaatttattgaaaagagtacagaaga---tactcaaaacccactacaatgaaata |
278 |
Q |
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| T |
23036590 |
gggttcatattaaaatacgttttttgtgacatttttaatataaacaaatttattgaaaagagtatagaagaagatactcaaaacccactacaatgaaata |
23036491 |
T |
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| Q |
279 |
aaatcggactctttaagataaaggtttcatttctacggtccctacaatgaagcaatattacgaagataaacattt |
353 |
Q |
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| T |
23036490 |
aaatcggactctttaagataaaggtttcatttctacggtccctacaatgaagcaatattacgaagataaacattt |
23036416 |
T |
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Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 23037065 - 23036969
Alignment:
| Q |
17 |
tgtggagtgcatctaatatcaacatcaaaatattagtttaaaggtagacttacacttaccttttaatttaaatagaacattatactttacctctttcttc |
116 |
Q |
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| T |
23037065 |
tgtggagtgcatctaatatcaacttcaaaatattagtgtaaaggtagacttac------cttttaatttaaatagaacattatactttatctctttcttc |
23036972 |
T |
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