View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_37 (Length: 366)
Name: NF1148_low_37
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_37 |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 13212185 - 13212516
Alignment:
| Q |
16 |
atgatgagaaaagtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgag |
115 |
Q |
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| T |
13212185 |
atgatgagaaaagtgattaagtgaataacatttttggttaaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgag |
13212284 |
T |
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| Q |
116 |
aagattttgaggaactccatggaaaagtgatgaagcattaggatctgctacaagttgttgctgttgctggttctgctgctgttgttgttgacttcccatg |
215 |
Q |
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| T |
13212285 |
aagattttgaggaactccatggaaaagtgatgaagcattaggatctgctacaagttgttgctgttgctggttctgctgctgttgttgttgacttcccatg |
13212384 |
T |
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| Q |
216 |
gttcccggtgaccctaaccctccatttcctggcacattcactggtgtttcttcaacttctaaaggtaacctttcataagcagcaattccaaaggaagctg |
315 |
Q |
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| T |
13212385 |
gttcccggtgaccctaaccctccatttcctggcacattcactggtgtttcttcatcttctaaaggtagcctttcataagcagcatttccaaaggaagctg |
13212484 |
T |
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| Q |
316 |
acatgataacacccggaccggaagctaacaac |
347 |
Q |
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| T |
13212485 |
ccatgataacaaccggaccggaagctaacaac |
13212516 |
T |
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Target: scaffold0415 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 13555 - 13478
Alignment:
| Q |
55 |
aaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgaggaactc |
132 |
Q |
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| T |
13555 |
aaaatggaggacgagcacttccacaccaataaccttcatgtagtaattggtatgaattgtgaaaattttgaagaactc |
13478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 29845934 - 29846011
Alignment:
| Q |
55 |
aaaaaggaggacgagcacttccaccccaataaccttcagctggtaattggcatgaattgagaagattttgaggaactc |
132 |
Q |
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|||| ||||||||||||||||||| ||||||||||||| | |||||||| |||||||| ||| ||||||| |||||| |
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| T |
29845934 |
aaaatggaggacgagcacttccacaccaataaccttcatgtagtaattggtatgaattgtgaaaattttgaagaactc |
29846011 |
T |
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