View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_38 (Length: 366)
Name: NF1148_low_38
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_38 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 245 - 356
Target Start/End: Complemental strand, 49575384 - 49575273
Alignment:
| Q |
245 |
agcaatcaaaggccaatttgtaacaacaccatcaacattcattgtcaaagcagatgttttcccaacaagaagaaaaacaacaagattcaaaccaaatgcg |
344 |
Q |
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| T |
49575384 |
agcaatcaaaagccaatctttaacaacaccagcaacattcattgtcaaagcagatgttttcccaacaagaagaaaaacagcaagattcaaagcaaatgca |
49575285 |
T |
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| Q |
345 |
cacaaagaatta |
356 |
Q |
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| T |
49575284 |
cacaaagaatta |
49575273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 49575661 - 49575613
Alignment:
| Q |
175 |
tttttgtcttttctttttcagattcttcaattataacctaaatgcaatt |
223 |
Q |
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| T |
49575661 |
tttttgtcttttctttttgagattcttgaattaaaaggtaaatgcaatt |
49575613 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 32713309 - 32713357
Alignment:
| Q |
265 |
taacaacaccatcaacattcattgtcaaagcagatgttttcccaacaag |
313 |
Q |
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| T |
32713309 |
taacaacaccagcaacattcattgtcaaaacatatgttttcccaacaag |
32713357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 29341737 - 29341685
Alignment:
| Q |
106 |
catctataaaattgcataaaatagatttgcaaagtttcatggcatttcaaaga |
158 |
Q |
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| T |
29341737 |
catctataaaaatgcataaaatggaaatgcaaagtttcatagcatttcgaaga |
29341685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 356
Target Start/End: Complemental strand, 242657 - 242568
Alignment:
| Q |
267 |
acaacaccatcaacattcattgtcaaagcagatgttttcccaacaagaagaaaaacaacaagattcaaaccaaatgcgcacaaagaatta |
356 |
Q |
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| T |
242657 |
acaacaccagcaacattcatcgtcaaagccgaagtcttcccaacaagcaaaaacacagcaaggttcaaagcaaaagcacacaacgaatta |
242568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 14776570 - 14776621
Alignment:
| Q |
106 |
catctataaaattgcataaaatagatttgcaaagtttcatggcatttcaaag |
157 |
Q |
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| T |
14776570 |
catctataaaaatacataaaagagatttgtaaagtttcatagcatttcaaag |
14776621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 32750606 - 32750554
Alignment:
| Q |
106 |
catctataaaattgcataaaatagatttgcaaagtttcatggcatttcaaaga |
158 |
Q |
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| T |
32750606 |
catctatagaaatgcataaaaaggatttgcaaagtttcgtagcatttcaaaga |
32750554 |
T |
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