View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1148_low_39 (Length: 366)

Name: NF1148_low_39
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1148_low_39
NF1148_low_39
[»] chr5 (2 HSPs)
chr5 (38-360)||(18280584-18280906)
chr5 (81-112)||(37480762-37480793)
[»] chr2 (1 HSPs)
chr2 (73-152)||(13451365-13451444)
[»] scaffold0244 (2 HSPs)
scaffold0244 (72-152)||(14936-15016)
scaffold0244 (260-351)||(15140-15231)
[»] chr4 (2 HSPs)
chr4 (68-148)||(7726145-7726225)
chr4 (80-152)||(840821-840893)
[»] chr1 (2 HSPs)
chr1 (307-351)||(1260503-1260547)
chr1 (72-112)||(1260252-1260292)


Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 38 - 360
Target Start/End: Complemental strand, 18280906 - 18280584
Alignment:
Q  38 gggtcgaatttatgatgtcaatacaagcctattagtgtcatgatcaatggtaatgctacaaatacaatcttggtaggaatacggaagaagagtatagagt 137  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18280906 gggtcgaatttatgatgtcaatacaagcctatcagtgtcatgatcaatggtaatgctacaaatacaatcttggtaggaatacggaagacgagtatagagt 18280807  T
Q  138 ttgttgaagttccaaccccattctccctcaaattgtagagacaaagattagtgtcactaatgtggacataagacatgccattaaagagacattatcaatc 237  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18280806 ttgttgaagttccaacctcattctccctcaaattgtagagacaaagattagtgtcactaatgtggacataagacatgctattaaagagacattatcaatc 18280707  T
Q  238 catttatcataccaaacttttcccaactctgcaaataaaattgggccataagatttcaactacctttataatagcacgccaaattcaagaatcaccaaac 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18280706 catttatcataccaaacttttcccaactctgcaaataaaattgggccataagatttcaactacctttatgatagcacgccaaattcaagaatcaccaaac 18280607  T
Q  338 ttaaaaagagtatgaaggatatg 360  Q
    ||| ||||||||||||| |||||    
T  18280606 ttagaaagagtatgaagaatatg 18280584  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 112
Target Start/End: Complemental strand, 37480793 - 37480762
Alignment:
Q  81 tcaatggtaatgctacaaatacaatcttggta 112  Q
    ||||||||||||||||||||||||||||||||    
T  37480793 tcaatggtaatgctacaaatacaatcttggta 37480762  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 13451444 - 13451365
Alignment:
Q  73 tgtcatgatcaatggtaatgctacaaatacaatcttggtaggaatacggaagaagagtatagagtttgttgaagttccaa 152  Q
    |||||||||||||||||||||||||||| |||||||||||  || | |||||  |||| |||| ||||||||||||||||    
T  13451444 tgtcatgatcaatggtaatgctacaaatgcaatcttggtaaaaagatggaagctgagtttagattttgttgaagttccaa 13451365  T

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Target: scaffold0244 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 14936 - 15016
Alignment:
Q  72 gtgtcatgatcaatggtaatgctacaaatacaatcttggtaggaatacggaagaagagtatagagtttgttgaagttccaa 152  Q
    ||||||||||||||||||||||||||||| |||| ||||||  ||   |||||  |||| || ||||||||||||||||||    
T  14936 gtgtcatgatcaatggtaatgctacaaatgcaattttggtaaaaaggtggaagttgagtgtaaagtttgttgaagttccaa 15016  T

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Target: scaffold0244; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 351
Target Start/End: Original strand, 15140 - 15231
Alignment:
Q  260 ccaactctgcaaataaaattgggccataagatttcaactacctttataatagcacgccaaattcaagaatcaccaaacttaaaaagagtatg 351  Q
    ||||||||| |||| |||   |||| ||||||||| ||| | |||| ||||||||| ||||| ||||||||||||  ||||||| |||||||    
T  15140 ccaactctgtaaatgaaacctggccctaagatttccactgcttttacaatagcacgtcaaatgcaagaatcaccaggcttaaaaggagtatg 15231  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 7726145 - 7726225
Alignment:
Q  68 attagtgtcatgatcaatggtaatgctacaaatacaatcttggtaggaatacggaagaagagtatagagtttgttgaagtt 148  Q
    |||||||||||||| ||| || ||||||||||||||||||||| |  |  | |||||| |||| |||||||| ||||||||    
T  7726145 attagtgtcatgattaatagtgatgctacaaatacaatcttggcaaaaggatggaagatgagtgtagagttttttgaagtt 7726225  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 840893 - 840821
Alignment:
Q  80 atcaatggtaatgctacaaatacaatcttggtaggaatacggaagaagagtatagagtttgttgaagttccaa 152  Q
    ||||||||||||||||| |||||| ||||||||  || | |||||  |||| || ||||||||||| ||||||    
T  840893 atcaatggtaatgctacgaatacagtcttggtaaaaagaaggaagctgagtgtatagtttgttgaaattccaa 840821  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 1260503 - 1260547
Alignment:
Q  307 aatagcacgccaaattcaagaatcaccaaacttaaaaagagtatg 351  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||||    
T  1260503 aatagcacgccaaatgcaagaatcaccaagcttaaaaggagtatg 1260547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 1260252 - 1260292
Alignment:
Q  72 gtgtcatgatcaatggtaatgctacaaatacaatcttggta 112  Q
    ||||||||||||||||||||||||| ||| |||| ||||||    
T  1260252 gtgtcatgatcaatggtaatgctacgaatgcaattttggta 1260292  T

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