View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1148_low_4 (Length: 731)

Name: NF1148_low_4
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1148_low_4
NF1148_low_4
[»] chr8 (6 HSPs)
chr8 (483-681)||(36154960-36155158)
chr8 (121-319)||(36154960-36155158)
chr8 (552-681)||(36151574-36151703)
chr8 (190-319)||(36151574-36151703)
chr8 (370-467)||(36155197-36155293)
chr8 (8-105)||(36155197-36155293)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 483 - 681
Target Start/End: Complemental strand, 36155158 - 36154960
Alignment:
Q  483 aagccaacataaaatacagaatcaatcacacaaaacaacaaaaaatcactgaatccttccatcaaataaaccttatagaacaactccaccaaccaaaccc 582  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36155158 aagccaacataaaatacagaatcaatcacacagaacaacaaaaaatcactgaatccttccatcaaataaaccttatagaacagctccaccaaccaaaccc 36155059  T
Q  583 attccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaacatcagcaggtaaatccttgccatcaccatcatcactaccagcacca 681  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36155058 attccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaacatcagcaggtaaatccttaccatcaccatcatcactaccagcacca 36154960  T

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Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 121 - 319
Target Start/End: Complemental strand, 36155158 - 36154960
Alignment:
Q  121 aagccaacataaaatacagaatcaatcacacaaaacaacaaaaaatcactgaatccttccatcaaataaaccttatagaacaactccaccaaccaaaccc 220  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36155158 aagccaacataaaatacagaatcaatcacacagaacaacaaaaaatcactgaatccttccatcaaataaaccttatagaacagctccaccaaccaaaccc 36155059  T
Q  221 attccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaacatcagcaggtaaatccttgccatcaccatcatcactaccagcacca 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36155058 attccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaacatcagcaggtaaatccttaccatcaccatcatcactaccagcacca 36154960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 552 - 681
Target Start/End: Complemental strand, 36151703 - 36151574
Alignment:
Q  552 accttatagaacaactccaccaaccaaacccattccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaacatcagcaggtaaatcc 651  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36151703 accttatagaacaactccaccaaccaaacccattccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaatatcagcaggtaaatcc 36151604  T
Q  652 ttgccatcaccatcatcactaccagcacca 681  Q
    ||||||||||||||||||||||||||||||    
T  36151603 ttgccatcaccatcatcactaccagcacca 36151574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 190 - 319
Target Start/End: Complemental strand, 36151703 - 36151574
Alignment:
Q  190 accttatagaacaactccaccaaccaaacccattccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaacatcagcaggtaaatcc 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36151703 accttatagaacaactccaccaaccaaacccattccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaatatcagcaggtaaatcc 36151604  T
Q  290 ttgccatcaccatcatcactaccagcacca 319  Q
    ||||||||||||||||||||||||||||||    
T  36151603 ttgccatcaccatcatcactaccagcacca 36151574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 370 - 467
Target Start/End: Complemental strand, 36155293 - 36155197
Alignment:
Q  370 agggaccaataacatatttaacccaaaaattaattactgaccaaaaagcccctcatgtataattggattctcataatccatgaacgaaacacaaatta 467  Q
    ||||||||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36155293 agggaccaatagcatatttaacccaaaaattaattaatgatcaaaa-gcccctcatgtataattgaattctcataatccatgaacgaaacacaaatta 36155197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 36155293 - 36155197
Alignment:
Q  8 agggaccaataacatatttaacccaaaaattaattactgaccaaaaagcccctcatgtataattggattctcataatccatgaacgaaacacaaatta 105  Q
    ||||||||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36155293 agggaccaatagcatatttaacccaaaaattaattaatgatcaaaa-gcccctcatgtataattgaattctcataatccatgaacgaaacacaaatta 36155197  T

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