View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_52 (Length: 328)
Name: NF1148_low_52
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 299
Target Start/End: Complemental strand, 14960438 - 14960141
Alignment:
| Q |
6 |
agaagcaaaggtcatgttcattttcatggtacataaaaaagaaacttcaaatagtgttaccaagtaaatatgtccataagtaagttagttagccaactgc |
105 |
Q |
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| T |
14960438 |
agaagcaaaggtcatgttcattttcatggtacataaaaaagaaacttcaaatagtgttaccaagtaaatatgtccataagtaagttag----ccaactgc |
14960343 |
T |
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| Q |
106 |
agtactcatgattgggaaccat--------gaattgattgctctcagaacaacaatgaaccataaaccaagtatgctgaataaagctacaaagaccacta |
197 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14960342 |
agtactcatgattgggaaccattcaaccatgaattgattgctctcagaacaacaatgaaccataaaccaagtatgctgaataaagctacaaagaccacta |
14960243 |
T |
|
| Q |
198 |
ttgatacaataaccactgtatctgcaaacaacaacagtaacagatgnnnnnnnnnttaaattatggtgtgcaaaattctatcttgttcatttctgtagtt |
297 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14960242 |
ttgaaacaataaccactgtatctgcaaacaacaacagtaacagatgaaaaaaaaattaaattatggtgtgcaaaattctatcttgttcatttctgtagtt |
14960143 |
T |
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