View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_56 (Length: 322)
Name: NF1148_low_56
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 6226415 - 6226210
Alignment:
| Q |
41 |
ctgagccaatccaaaaattcccaaccccaaacatgaaattcctcctaaacataaacagattttcaataccattactaaaattcatctttgttcatggtaa |
140 |
Q |
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| T |
6226415 |
ctgagccaatccaaaaattcccaaccccaaacatgaaattcctcctaaacataaacagattttcaataccattactaaaattcatctttgttcatggtaa |
6226316 |
T |
|
| Q |
141 |
gttgaaaacaattaccaacaaaccttttaaaccaaaaagtgcacttgctgcctctcaagtgttgcaagaacaaaattccgaaggtgcgacattctaatat |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6226315 |
gttgaaaacaattaccaacaaaccttttaaaccaaaaagtgcacttgctgcctctcaagtgttgcaagaacaaaattccgaaggtgcaacattctaatat |
6226216 |
T |
|
| Q |
241 |
agagta |
246 |
Q |
| |
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|||||| |
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| T |
6226215 |
agagta |
6226210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 1786599 - 1786533
Alignment:
| Q |
54 |
aaaattcccaaccccaaacatgaaattcctcctaaacataaacagattttcaataccattactaaaa |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1786599 |
aaaattcccaaccccaaacatgaaattcctcctaaacataaacagattttcaataccattactaaaa |
1786533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 8745190 - 8745218
Alignment:
| Q |
92 |
taaacagattttcaataccattactaaaa |
120 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
8745190 |
taaacagattttcaataccattactaaaa |
8745218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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