View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_62 (Length: 313)
Name: NF1148_low_62
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_62 |
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| [»] scaffold0470 (1 HSPs) |
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| [»] scaffold0514 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 298
Target Start/End: Original strand, 6841362 - 6841629
Alignment:
| Q |
30 |
caccccaaatagtgtttatgttgaagctacaaaagttgttaacaaggtttttcttacgtggataggattgtcagggtttgttggtttatgccatacacta |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6841362 |
caccccaaatagtgtttatgttgaagctacaaaagttgttaacaaggtttttcttacgtggataggattgtcagggtttgttggtttatgccatacacta |
6841461 |
T |
|
| Q |
130 |
aggttggttacttggggagtgaatgttttcctcaaaagaagtaagaagccagagactccaaaaagtacaaaggagactccgatttgctagttttttaaaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6841462 |
aggttggttacttggggagtgaatgttttcctcaaaagaagtaagaagccagagactccaaaaagtacaaaggagactccgatttgctagttttttaaaa |
6841561 |
T |
|
| Q |
230 |
cttcattaatatgagtctttatttgggacgtctcgaccgtataatattatgtatcaaacttgtctttat |
298 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
6841562 |
cttcattaatatgagtctttatttgggacgtctcgactgtataatattatgtatc-aacttgtctttat |
6841629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 38 - 283
Target Start/End: Original strand, 6621837 - 6622082
Alignment:
| Q |
38 |
atagtgtttatgttgaagctacaaaagttgttaacaaggtttttcttacgtggataggattgtcagggtttgttggtttatgccatacactaaggttggt |
137 |
Q |
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|||| |||||| |||||||||| ||||||||||||| |||||| |||||||||| |||||||| | |||| |||||||||||||||||||||||||||| |
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| T |
6621837 |
atagagtttattttgaagctaccgaagttgttaacaaagttttttttacgtggattggattgtcggcgtttattggtttatgccatacactaaggttggt |
6621936 |
T |
|
| Q |
138 |
tacttggggagtgaatgttttcctcaaaagaagtaagaagccagagactccaaaaagtacaaaggagactccgatttgctagttttttaaaacttcatta |
237 |
Q |
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|||||||||||||| |||| ||||| |||||| |||||||||| | | | |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6621937 |
tacttggggagtgattgttctcctcgaaagaaataagaagccaaaaagtacaaaaaatacaaaggagactccgatttgctagttttttaaaacttcatta |
6622036 |
T |
|
| Q |
238 |
atatgagtctttatttgggacgtctcgaccgtataatattatgtat |
283 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
6622037 |
ctatgagtctttatttgggacgtctcgaccatataaaattatgtat |
6622082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 38 - 283
Target Start/End: Original strand, 6788715 - 6788951
Alignment:
| Q |
38 |
atagtgtttatgttgaagctacaaaagttgttaacaaggtttttcttacgtggataggattgtcagggtttgttggtttatgccatacactaaggttggt |
137 |
Q |
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|||| |||||| |||||||||| ||||||||||||| |||||| |||||||||| |||||||| | |||| |||||||||||||||||||||||||||| |
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| T |
6788715 |
atagagtttattttgaagctaccgaagttgttaacaaagttttttttacgtggattggattgtcggcgtttattggtttatgccatacactaaggttggt |
6788814 |
T |
|
| Q |
138 |
tacttggggagtgaatgttttcctcaaaagaagtaagaagccagagactccaaaaagtacaaaggagactccgatttgctagttttttaaaacttcatta |
237 |
Q |
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|||||||||||||| |||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6788815 |
tacttggggagtgattgttctcctcgaaagaaataagaag---------ccaaaaagtacaaaggagactccgatttgctagttttttaaaacttcatta |
6788905 |
T |
|
| Q |
238 |
atatgagtctttatttgggacgtctcgaccgtataatattatgtat |
283 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
6788906 |
ctatgagtctttatttgggacgtctcgaccatataaaattatgtat |
6788951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 33 - 276
Target Start/End: Original strand, 6596018 - 6596244
Alignment:
| Q |
33 |
cccaaatagtgtttatgttgaagctacaaaagttgttaacaaggtttttcttacgtggataggattgtcagggtttgttggtttatgccatacactaagg |
132 |
Q |
| |
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|||| |||||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||||| | ||| ||||||||||||||||||||||| |
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| T |
6596018 |
cccagatagtgtttatgttcgagctaccgaagttgttaacaaggttttttttacgtggatcggattgtccgcatttattggtttatgccatacactaagg |
6596117 |
T |
|
| Q |
133 |
ttggttacttggggagtgaatgttttcctcaaaagaagtaagaagccagagactccaaaaagtacaaaggagactccgatttgctag-ttttttaaaact |
231 |
Q |
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||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||| |||||||||| | |
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| T |
6596118 |
ttggttacttggggagtgattgttttcctggaaagaaataagaagc------------------caaaggagactccgatttgctagtttttttaaaatt |
6596199 |
T |
|
| Q |
232 |
tcattaatatgagtctttatttgggacgtctcgaccgtataatat |
276 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
6596200 |
tcattactatgagtctttatttgggacgtctcgactgtataatat |
6596244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 6812123 - 6812182
Alignment:
| Q |
171 |
taagaagccagagactccaaaaagtacaaaggagactccgatttgctagttttttaaaac |
230 |
Q |
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||||||| || | |||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
6812123 |
taagaaggcaaaaactccaaaaattacaaaggagactttgatttgctagttttttaaaac |
6812182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 6849720 - 6849655
Alignment:
| Q |
110 |
ttggtttatgccatacactaaggttggttacttggggagtgaatgttttcctcaaaagaagtaaga |
175 |
Q |
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||||||| |||| ||| |||||||||||| |||||||||| | |||||||||| |||||||||| |
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| T |
6849720 |
ttggtttttgcctcacaataaggttggttatttggggagtggaatttttcctcaacagaagtaaga |
6849655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 38 - 283
Target Start/End: Original strand, 11255 - 11500
Alignment:
| Q |
38 |
atagtgtttatgttgaagctacaaaagttgttaacaaggtttttcttacgtggataggattgtcagggtttgttggtttatgccatacactaaggttggt |
137 |
Q |
| |
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|||| |||||| |||||||||| ||||||||||||| |||||| |||||||||| |||||||| | |||| |||||||||||||||||||||||||||| |
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| T |
11255 |
atagagtttattttgaagctaccgaagttgttaacaaagttttttttacgtggattggattgtcggcgtttattggtttatgccatacactaaggttggt |
11354 |
T |
|
| Q |
138 |
tacttggggagtgaatgttttcctcaaaagaagtaagaagccagagactccaaaaagtacaaaggagactccgatttgctagttttttaaaacttcatta |
237 |
Q |
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|
|||||||||||||| |||| ||||| |||||| |||||||||| | | | |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11355 |
tacttggggagtgattgttctcctcgaaagaaataagaagccaaaaagtacaaaaaatacaaaggagactccgatttgctagttttttaaaacttcatta |
11454 |
T |
|
| Q |
238 |
atatgagtctttatttgggacgtctcgaccgtataatattatgtat |
283 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
11455 |
ctatgagtctttatttgggacgtctcgaccatataaaattatgtat |
11500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0514 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0514
Description:
Target: scaffold0514; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 31 - 283
Target Start/End: Complemental strand, 394 - 151
Alignment:
| Q |
31 |
accccaaatagtgtttatgttgaagctacaaaagttgttaacaaggtttttcttacgtggataggattgtcagggtttgttggtttatgccatacactaa |
130 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||| |
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|
| T |
394 |
accccaaatagtgtttatgttcgagctaccgaagttgttaacaaggttttttttacgtggataggattgtccgcatttattggtttatgccatacactaa |
295 |
T |
|
| Q |
131 |
ggttggttacttggggagtgaatgttttcctcaaaagaagtaagaagccagagactccaaaaagtacaaaggagactccgatttgctagttttttaaaac |
230 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
294 |
ggttggttacttggggagtgattgttttcctggaaagaaataagaag---------ccaaaaagtacaaaggagactcccatttgctagttttttaaaac |
204 |
T |
|
| Q |
231 |
ttcattaatatgagtctttatttgggacgtctcgaccgtataatattatgtat |
283 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
203 |
ttcattactatgagtctttatttgggacgtctcgaccatataaaattatgtat |
151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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