View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1148_low_63 (Length: 312)

Name: NF1148_low_63
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1148_low_63
NF1148_low_63
[»] chr3 (4 HSPs)
chr3 (104-230)||(29199753-29199879)
chr3 (100-225)||(19768243-19768368)
chr3 (168-222)||(12572313-12572367)
chr3 (168-222)||(13548777-13548831)
[»] chr6 (1 HSPs)
chr6 (100-225)||(22082936-22083061)
[»] chr4 (1 HSPs)
chr4 (100-225)||(37616919-37617044)
[»] chr7 (1 HSPs)
chr7 (100-218)||(32662990-32663108)
[»] chr1 (1 HSPs)
chr1 (100-224)||(51389585-51389702)
[»] chr2 (1 HSPs)
chr2 (239-299)||(33717576-33717636)
[»] chr8 (1 HSPs)
chr8 (124-186)||(770404-770466)
[»] chr5 (1 HSPs)
chr5 (168-229)||(4351726-4351787)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 29199879 - 29199753
Alignment:
Q  104 cctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaagcatatccta 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29199879 cctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattaaatgaacaaagcatatccta 29199780  T
Q  204 caaaatggctaaacagaaacatcgaaa 230  Q
    |||||||||||||||||||||||||||    
T  29199779 caaaatggctaaacagaaacatcgaaa 29199753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 19768368 - 19768243
Alignment:
Q  100 ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaagcatat 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  ||||| |||||||||||||||||||||||||||| |||    
T  19768368 ggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgcaacacagattaggcaaagagtaaaattgaatgaacaaagcctat 19768269  T
Q  200 cctacaaaatggctaaacagaaacat 225  Q
    |  |||||||||||||||||||||||    
T  19768268 cgcacaaaatggctaaacagaaacat 19768243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 12572313 - 12572367
Alignment:
Q  168 gcaaagagtaaaattgaatgaacaaagcatatcctacaaaatggctaaacagaaa 222  Q
    ||||||| ||||||||||| ||||||| ||||  ||||||||||||||| |||||    
T  12572313 gcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaa 12572367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 13548777 - 13548831
Alignment:
Q  168 gcaaagagtaaaattgaatgaacaaagcatatcctacaaaatggctaaacagaaa 222  Q
    ||||||| ||||||||||| ||||||| ||||  ||||||||||||||| |||||    
T  13548777 gcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaa 13548831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 22083061 - 22082936
Alignment:
Q  100 ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaagcatat 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  ||||| |||||||||||||||||||||||||||| |||    
T  22083061 ggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgcaacacagattaggcaaagagtaaaattgaatgaacaaagcctat 22082962  T
Q  200 cctacaaaatggctaaacagaaacat 225  Q
    |  |||||||||| ||||||||||||    
T  22082961 cgcacaaaatggcaaaacagaaacat 22082936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 37616919 - 37617044
Alignment:
Q  100 ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaagcatat 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||   |||| |||||||||||||||||||||| ||||| |||    
T  37616919 ggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgcaacacaaattaggcaaagagtaaaattgaatgaaaaaagcctat 37617018  T
Q  200 cctacaaaatggctaaacagaaacat 225  Q
    |  |||||||||||||||||||||||    
T  37617019 cgcacaaaatggctaaacagaaacat 37617044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 32663108 - 32662990
Alignment:
Q  100 ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaagcatat 199  Q
    |||||||||||||||||||||||||||||| ||||| || ||| ||||| ||||||||||| ||||  | ||||||||||| ||||||||||||   |||    
T  32663108 ggtccctatttatacatgagaagtcctaaacaagagggtaatgaattcacgcatgcaacaatgattgggaaaagagtaaaactgaatgaacaaactctat 32663009  T
Q  200 cctacaaaatggctaaaca 218  Q
    | ||||||| |||||||||    
T  32663008 cgtacaaaacggctaaaca 32662990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 51389585 - 51389702
Alignment:
Q  100 ggtccctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaatgaacaaagcatat 199  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || || ||       ||||||||| ||||||||  |||    
T  51389585 ggtccctatttatacatgagaagtcctaaagaagagggtcatggattcaagcatgcaacaatgaataggc-------aaaattgaacgaacaaagtctat 51389677  T
Q  200 cctacaaaatggctaaacagaaaca 224  Q
    |  |||||| |||||||||||||||    
T  51389678 cgcacaaaacggctaaacagaaaca 51389702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 33717576 - 33717636
Alignment:
Q  239 tgtgtaaattctttgaaatagtctatgttagttacattttataatttgtttacattgtgtg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33717576 tgtgtaaattctttgaaatagtctatgttagttacattttataatttgtttacattttgtg 33717636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 770466 - 770404
Alignment:
Q  124 cctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattgaat 186  Q
    |||||||||||| ||||||||||||| |||||||||||||||| ||||| |||||||||||||    
T  770466 cctaaagaagagggtcatggattcaaacatgcaacaacgattaggcaaatagtaaaattgaat 770404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 4351787 - 4351726
Alignment:
Q  168 gcaaagagtaaaattgaatgaacaaagcatatcctacaaaatggctaaacagaaacatcgaa 229  Q
    ||||||| ||||||||||| ||||||| ||||  ||||||||||||||| ||||| ||||||    
T  4351787 gcaaagattaaaattgaatcaacaaagtatatgatacaaaatggctaaaaagaaaaatcgaa 4351726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University