View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_64 (Length: 301)
Name: NF1148_low_64
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 41806553 - 41806808
Alignment:
| Q |
15 |
gggagaaattcaaaacttgataaactataaacttaagaaaattttaaagtattgtaataatcact-cacattgtacaccttaattcatagattttatacc |
113 |
Q |
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| T |
41806553 |
gggagaaattcaaaacttgataaactataaacttaagaaaattttaaagtattgtaat---cactgcacattgtacaccttaattcatagattttatacc |
41806649 |
T |
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| Q |
114 |
aatcacttatcactccagcctaaggcctaaaggtccttgatcgttcatattttgattattatgaacatattcaagatccaattgttactcgaaaagcttt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
41806650 |
aatcacttatcactccagcctaaggcctaaaggtccttgatcgttcatattttgattattatgaacatattcaagatccaattattactggaaaagcttt |
41806749 |
T |
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| Q |
214 |
tgatcnnnnnnnnnctatgacaaatgctatcccatattccaatcatcaacacacgatatt |
273 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41806750 |
tgat-tttttttttctatgacaaatgctatcccatattccaatcatcaacacacgatatt |
41806808 |
T |
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