View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1148_low_69 (Length: 296)

Name: NF1148_low_69
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1148_low_69
NF1148_low_69
[»] chr8 (3 HSPs)
chr8 (133-218)||(12934604-12934689)
chr8 (220-276)||(12930336-12930390)
chr8 (220-276)||(12935082-12935136)
[»] chr4 (4 HSPs)
chr4 (133-218)||(14177874-14177959)
chr4 (133-218)||(28607914-28607999)
chr4 (220-296)||(28607445-28607521)
chr4 (220-296)||(28612207-28612283)
[»] chr6 (1 HSPs)
chr6 (220-296)||(2308760-2308836)
[»] chr1 (1 HSPs)
chr1 (220-296)||(34906756-34906832)
[»] chr7 (1 HSPs)
chr7 (133-218)||(15300390-15300475)
[»] chr3 (1 HSPs)
chr3 (220-292)||(51298526-51298598)
[»] chr2 (1 HSPs)
chr2 (220-291)||(8538835-8538906)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 12934604 - 12934689
Alignment:
Q  133 tgacctggatggtagaaagtctacttcaagaattgtgtttacttttgcagggggagctgtatcttggcaatctaaattgcaaaaat 218  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12934604 tgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcagggggagctgtatcttggcaatctaaattgcaaaaat 12934689  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 12930336 - 12930390
Alignment:
Q  220 tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattg 276  Q
    ||||||||||||||||||||  |||  |||||||||||||||| ||||||| |||||    
T  12930336 tggccccaccacgtgtgggttatgt--ccagccaaagacaattgctacaagcaattg 12930390  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 12935082 - 12935136
Alignment:
Q  220 tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattg 276  Q
    ||||||||||||||||||||  |||  |||||||||||||||| ||||||| |||||    
T  12935082 tggccccaccacgtgtgggttatgt--ccagccaaagacaattgctacaagcaattg 12935136  T

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Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 14177874 - 14177959
Alignment:
Q  133 tgacctggatggtagaaagtctacttcaagaattgtgtttacttttgcagggggagctgtatcttggcaatctaaattgcaaaaat 218  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14177874 tgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcagggggagctgtatcttggcaatctaaattgcaaaaat 14177959  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 28607999 - 28607914
Alignment:
Q  133 tgacctggatggtagaaagtctacttcaagaattgtgtttacttttgcagggggagctgtatcttggcaatctaaattgcaaaaat 218  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607999 tgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcagggggagctgtatcttggcaatctaaattgcaaaaat 28607914  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 28607521 - 28607445
Alignment:
Q  220 tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607521 tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatt 28607445  T

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Target: chr4; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 28612283 - 28612207
Alignment:
Q  220 tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28612283 tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatt 28612207  T

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Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 2308760 - 2308836
Alignment:
Q  220 tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2308760 tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatt 2308836  T

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Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 34906756 - 34906832
Alignment:
Q  220 tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34906756 tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatt 34906832  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 15300390 - 15300475
Alignment:
Q  133 tgacctggatggtagaaagtctacttcaagaattgtgtttacttttgcagggggagctgtatcttggcaatctaaattgcaaaaat 218  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||    
T  15300390 tgacctggatggtagaaagtctgcttcaggaattgtgtttgcttttgcagggtgagctatatcttggcaatctaaattgcaaaaat 15300475  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 51298526 - 51298598
Alignment:
Q  220 tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacc 292  Q
    |||||||||||||||||| |||||||||  |||||| |||||||||||||||||||| ||||||| |||||||    
T  51298526 tggccccaccacgtgtggctattgtttctggccaaaaacaattactacaagtaattgcaaatagttttctacc 51298598  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 8538835 - 8538906
Alignment:
Q  220 tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagt-aattgtaaatagtcttctac 291  Q
    |||||||||||| |||||||| |||| |||||||||||||||||||| || | |||| ||| |||||||||||    
T  8538835 tggccccaccacatgtgggtactgtt-ccagccaaagacaattactataaataaattataactagtcttctac 8538906  T

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