View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_7 (Length: 612)
Name: NF1148_low_7
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 598
Target Start/End: Original strand, 37163024 - 37163621
Alignment:
| Q |
1 |
aacttcaacatactcatgataaacaccctccttgatatgaataacaaaaggtttttggttcttctttggaacctgtttcaaagcatcattgattttcttg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37163024 |
aacttcaacatactcatgataaacaccctccttgatatgaataacaaaaggtttttggttcttctttggaacctgtttcaaagcatcattgattttctta |
37163123 |
T |
|
| Q |
101 |
aactttccactaccatctttagccacaaccacattagccttgagtttatgttgatttacatgaagaagtcttcgaacaccaacacttaaaccatcaccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37163124 |
aactttccactaccatctttagccacaaccacattagccttgagtttatgttgatttacatgaagaagtcttcgaacaccaacacttaaaccatcaccaa |
37163223 |
T |
|
| Q |
201 |
cccaagaaggaacatcattaacatcatctttagcaacaacttgttcacccacatactcgcccttataatcatcaataagtcgacgtccatctgttgtcgc |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37163224 |
cccaagaaggaacatcattaacatcatctttagcaacaacttgttcacccacatactcgcccttataatcatcaataagacgacgtccatctgttgtcgc |
37163323 |
T |
|
| Q |
301 |
gttcaaatccaaaacattatctgccaaatctgaaatgacagcaagtgcattgctactcatatgcattgaagttgttaaaatattcttcattttcttgcta |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37163324 |
gttcaaatccaaaacattatctgccaaatctgaaatgacagcaagtgcattgctactcatatgcattgaagttgttaaaatattcttcattttcttgcta |
37163423 |
T |
|
| Q |
401 |
gcatcactagtagtattctcaaaaccatctaaacaagtttcttggtatgtaattgcaccacttaaccaaacctttaaattcacaagaatgttttctaaat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37163424 |
gcatcactagtagtattctcaaaaccatctaaacaagtttcttggtatgtaattgcaccacttaaccaaacctttaaattcacaagaatgttttctaaat |
37163523 |
T |
|
| Q |
501 |
tattgagatcaaannnnnnnattccctctattgacctatcaaattcgccaatagaaagatccattaattgcttgcatgtgtctagtgccatttttgcc |
598 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37163524 |
tattgagatcaaaattttttattccctctattgacctatcgaattcgccaatagaaagatccattaattgcttgcatgtgtctagtgccatttttgcc |
37163621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 348 - 468
Target Start/End: Complemental strand, 46314825 - 46314705
Alignment:
| Q |
348 |
cattgctactcatatgcattgaagttgttaaaatattcttcattttcttgctagcatcactagtagtattctcaaaaccatctaaacaagtttcttggta |
447 |
Q |
| |
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||||||||||||||||||| |||||| |||| | |||||||| || | |||||| | ||||||||||||||| |||| ||||| ||||||||||| |
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| T |
46314825 |
cattgctactcatatgcatagaagtttgcaaaacctctttcatttttttaccagcatcggttgtagtattctcaaaagcatccaaacatgtttcttggta |
46314726 |
T |
|
| Q |
448 |
tgtaattgcaccacttaacca |
468 |
Q |
| |
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||| || ||||| |||||||| |
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| T |
46314725 |
tgtgatggcaccgcttaacca |
46314705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 46315160 - 46315021
Alignment:
| Q |
1 |
aacttcaacatactcatgataaacaccctccttgatatgaataacaaaaggtttttggttcttctttggaacctgtttcaaagcatcattgattttcttg |
100 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||| | ||||||||| || || ||| ||||| ||||| || || | ||| ||| ||||| | || |
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| T |
46315160 |
aacttcaacatactctttataaacaccctccttgatgtaaataacaaatggcttcaagtttttcttgggaacatgcttaagagcctcagtgattgtggtg |
46315061 |
T |
|
| Q |
101 |
aactttccactaccatctttagccacaaccacattagcct |
140 |
Q |
| |
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|| |||||||| ||||| ||||| ||||| |||| ||||| |
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|
| T |
46315060 |
aaatttccacttccatccttagcaacaacaacatgagcct |
46315021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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