View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_71 (Length: 284)
Name: NF1148_low_71
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_71 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 48258237 - 48258506
Alignment:
| Q |
15 |
tatatatgatggtggacttgggttcagaaacataaggagcttcattgaagcattcttggctaagcaattttggaggcttcacactgagcctattactatg |
114 |
Q |
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| T |
48258237 |
tatatatgatggtggacttgggttcagaaacataaggagcttcattgaagcattcttggctaagcaattttggaggcttcacactgagcctattactatg |
48258336 |
T |
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| Q |
115 |
cttgctaaatgactcaaggtaatatactttccccatgttgataatgggtttaaagtcttaacccaaaacttggaataaaaccttgattgacactattttt |
214 |
Q |
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| T |
48258337 |
cttgctaaatgactcaaggtaatatactttccccatgttgataatgggtttaaagtcttaacccaaaacttggaataaaaccttgtttgacactattttt |
48258436 |
T |
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| Q |
215 |
catagtaatgagagcagtcaaatcaagcaacgttctctaatcctagagcaaattgaagataagtttatgt |
284 |
Q |
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| T |
48258437 |
catagtaatgagagcagtcaaatcaagcaacgttctctaatccaagagcaaattgaagataagtttatgt |
48258506 |
T |
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