View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1148_low_79 (Length: 253)

Name: NF1148_low_79
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1148_low_79
NF1148_low_79
[»] chr8 (7 HSPs)
chr8 (15-170)||(41188614-41188771)
chr8 (19-135)||(14507158-14507274)
chr8 (62-144)||(15068498-15068580)
chr8 (18-92)||(17469295-17469369)
chr8 (26-103)||(36131880-36131957)
chr8 (18-120)||(9642297-9642399)
chr8 (59-135)||(15173799-15173875)
[»] chr5 (6 HSPs)
chr5 (37-135)||(34259314-34259412)
chr5 (59-133)||(43523841-43523915)
chr5 (15-72)||(38006464-38006521)
chr5 (59-145)||(2681309-2681395)
chr5 (59-101)||(18116471-18116513)
chr5 (24-104)||(12712520-12712600)
[»] chr4 (14 HSPs)
chr4 (61-144)||(41914907-41914990)
chr4 (18-138)||(10574348-10574468)
chr4 (59-144)||(30673060-30673145)
chr4 (59-146)||(45065348-45065435)
chr4 (60-146)||(31415840-31415926)
chr4 (15-89)||(43351353-43351427)
chr4 (59-116)||(7334136-7334193)
chr4 (59-132)||(30266265-30266338)
chr4 (59-132)||(30285850-30285923)
chr4 (37-85)||(3505333-3505381)
chr4 (25-77)||(11173026-11173078)
chr4 (63-135)||(16216578-16216650)
chr4 (44-104)||(20819588-20819648)
chr4 (54-146)||(53906247-53906339)
[»] chr2 (7 HSPs)
chr2 (59-144)||(26755834-26755919)
chr2 (29-85)||(34320677-34320733)
chr2 (53-104)||(35337854-35337905)
chr2 (56-144)||(4428015-4428103)
chr2 (59-119)||(42102619-42102679)
chr2 (31-77)||(18485702-18485748)
chr2 (16-144)||(6027811-6027939)
[»] chr7 (10 HSPs)
chr7 (59-144)||(27063432-27063517)
chr7 (18-144)||(28309537-28309663)
chr7 (59-144)||(27063236-27063321)
chr7 (24-92)||(3920589-3920657)
chr7 (16-92)||(26004448-26004524)
chr7 (29-92)||(23533578-23533641)
chr7 (59-144)||(30839043-30839129)
chr7 (24-98)||(42005955-42006029)
chr7 (34-144)||(43550339-43550449)
chr7 (59-144)||(21702757-21702842)
[»] scaffold0008 (2 HSPs)
scaffold0008 (56-147)||(67839-67930)
scaffold0008 (56-147)||(75682-75773)
[»] chr6 (7 HSPs)
chr6 (18-138)||(14410784-14410903)
chr6 (56-144)||(18908983-18909071)
chr6 (18-91)||(14034542-14034615)
chr6 (17-72)||(14506125-14506180)
chr6 (59-144)||(2367419-2367504)
chr6 (59-104)||(9458756-9458801)
chr6 (60-145)||(20610891-20610976)
[»] chr1 (2 HSPs)
chr1 (59-144)||(19003576-19003661)
chr1 (64-144)||(37032410-37032490)
[»] chr3 (1 HSPs)
chr3 (16-92)||(49025718-49025794)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 41188771 - 41188614
Alignment:
Q  15 tctgttactcgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatac 114  Q
    |||||||||||||||||||| ||||||||||||| ||||||||  |||| || ||||||||| ||||| ||||||||| ||||||||||| |||||||||    
T  41188771 tctgttactcgtcccatacccgtattttaaaattaaggaaaaccaaaactcaatcaaatcggaaaaaacccatcaaattagggttggtttggacggatac 41188672  T
Q  115 ccatggatacgggttttgttgtc--aagcctagtccggggatcaaatcctggtcaccc 170  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||| || ||||||||    
T  41188671 ccatggatacgggttttgttgtcaaaagcctagttcggggatcaaaccccggtcaccc 41188614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 14507274 - 14507158
Alignment:
Q  19 ttactcgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccat 118  Q
    |||| |||||||||||  ||||||| ||||||||||||| ||||| |||||||||||| ||||| || |||||| ||||||||||| | |||  ||||||    
T  14507274 ttacccgtcccatacccatattttataattgaggaaaacccaaactcagtcaaatcggaaaaaacccgtcaaattagggttggtttgggcgggcacccat 14507175  T
Q  119 ggatacgggttttgttg 135  Q
    ||  |||| ||||||||    
T  14507174 gggcacggattttgttg 14507158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 15068580 - 15068498
Alignment:
Q  62 acccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagccta 144  Q
    |||||||||||||||| |||| || ||||||| |||||||||| | ||| |||||||||  ||||||||||||| || |||||    
T  15068580 acccagtcaaatcggggaaaacccgtcaaatcggggttggtttgggcgggtacccatgggcacgggttttgttgccatgccta 15068498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 17469295 - 17469369
Alignment:
Q  18 gttactcgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaat 92  Q
    ||||| ||||||||||| || |||| |||| | ||||||| |||||||||||||| |||| ||||||| ||||||    
T  17469295 gttacccgtcccatacccgtgttttgaaatcggggaaaacccaaacccagtcaaaacggggaaaatccgtcaaat 17469369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 36131957 - 36131880
Alignment:
Q  26 tcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtt 103  Q
    ||||||||  || |||| |||| | |||||||||||||||| ||||| ||| ||||||||||||||| ||| ||||||    
T  36131957 tcccatactcgtgttttgaaataggggaaaactcaaacccaatcaaaacggaaaaaatccatcaaattaggtttggtt 36131880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 9642399 - 9642297
Alignment:
Q  18 gttactcgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggataccca 117  Q
    ||||| ||||||||||| || |||| |||| | ||||||| |||||||||||||| |||| |||| || ||||| | || | ||| | ||||| ||||||    
T  9642399 gttacccgtcccatacccgtgttttgaaatcggggaaaacccaaacccagtcaaagcggggaaaacccgtcaaaccgggatgggtctggacgggtaccca 9642300  T
Q  118 tgg 120  Q
    |||    
T  9642299 tgg 9642297  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 15173875 - 15173799
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttg 135  Q
    |||||||||||||||| |  |||| || |||||||  ||||||||| | ||| |||||||||||| || ||||||||    
T  15173875 caaacccagtcaaatcagagaaaacccgtcaaatcgaggttggtttgggcgggtacccatggataaggattttgttg 15173799  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 34259314 - 34259412
Alignment:
Q  37 tattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttg 135  Q
    |||||| |||| |||||||| ||||||||||||||||| ||||||| | |||||||| |||||||||| ||||||||||||  |  |||||||||||||    
T  34259314 tattttgaaatcgaggaaaattcaaacccagtcaaatcaggaaaaacctatcaaatcggggttggtttggacggatacccagaggcacgggttttgttg 34259412  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 43523841 - 43523915
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgt 133  Q
    ||||| ||||||||||||||||||||| ||||||| || ||||||| || || | |||||||| |||||||||||    
T  43523841 caaactcagtcaaatcgggaaaaatccgtcaaatcgggattggtttggatgggtgcccatggacacgggttttgt 43523915  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 38006521 - 38006464
Alignment:
Q  15 tctgttactcgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaa 72  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||    
T  38006521 tctgttacgcgtcccatacccgtattttgaaattggggaaaacccaaacccagtcaaa 38006464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 2681309 - 2681395
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagcctag 145  Q
    ||||| ||||||||||||| |||| || ||||||   ||||||||| ||||| |||||||||  ||| ||||||||| || ||||||    
T  2681309 caaactcagtcaaatcggggaaaacccgtcaaattgaggttggtttggacgggtacccatgggcacgagttttgttgccatgcctag 2681395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 18116513 - 18116471
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttgg 101  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||    
T  18116513 caaactcagtcaaatcgggaaaaatccgtcaaatcggggttgg 18116471  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 12712600 - 12712520
Alignment:
Q  24 cgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggttt 104  Q
    |||||| |||| ||||||| |||| |  |||||| ||||| ||||||||||||| |||| |  ||||||| ||||||||||    
T  12712600 cgtcccgtacccgtattttgaaatcggagaaaacccaaactcagtcaaatcggggaaaacctgtcaaatcggggttggttt 12712520  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 41914990 - 41914907
Alignment:
Q  61 aacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagccta 144  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| | ||| |||||||||  | |||||||||||||| |||||    
T  41914990 aacccagtcaaatcggggaaaatccatcaaatcggggttggtttgggcggttacccatgggcatgggttttgttgtcatgccta 41914907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 10574468 - 10574348
Alignment:
Q  18 gttactcgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggataccca 117  Q
    ||||| |||||| |||||||||| | |||| | |||||| |||||||||||||||||||| |||| || ||||||| || ||| ||| | ||| |||||     
T  10574468 gttacccgtcccgtacctgtattatgaaatcggggaaaattcaaacccagtcaaatcggggaaaacccgtcaaatcgggattgatttgggcgggtaccct 10574369  T
Q  118 tggatacgggttttgttgtca 138  Q
    |||| || | |||||||||||    
T  10574368 tggacacagattttgttgtca 10574348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 30673060 - 30673145
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagccta 144  Q
    |||||||| ||||||| || |||| || ||||||   ||||||||| |||||||||||||||| | |||||||||||||| |||||    
T  30673060 caaacccaatcaaatcagggaaaacccgtcaaattgtggttggtttggacggatacccatggacatgggttttgttgtcatgccta 30673145  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 45065348 - 45065435
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagcctagt 146  Q
    ||||||||||||||| ||| ||||  | ||||||| |||||||||| | ||| |||||||||  ||||||||||||| || |||||||    
T  45065348 caaacccagtcaaattggggaaaactcgtcaaatcggggttggtttgggcgggtacccatgggcacgggttttgttgccatgcctagt 45065435  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 31415926 - 31415840
Alignment:
Q  60 aaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagcctagt 146  Q
    |||||||||||||||||| |||| || | ||||| |||||| ||| | ||| |||||||||| | |||||| |||| || |||||||    
T  31415926 aaacccagtcaaatcggggaaaacccgttaaatcggggttgatttgggcgggtacccatggacatgggtttcgttgccatgcctagt 31415840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 43351427 - 43351353
Alignment:
Q  15 tctgttactcgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatca 89  Q
    |||||||||||||||| ||  |||||||||||| ||  ||||||||||| || ||||| ||| ||||| ||||||    
T  43351427 tctgttactcgtcccaaactcgtattttaaaatcgaaaaaaactcaaactcaatcaaaacggaaaaaaaccatca 43351353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 7334193 - 7334136
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggataccc 116  Q
    |||||||||||||| ||||||||| || |||||| ||| |||||| || |||||||||    
T  7334193 caaacccagtcaaagcgggaaaaacccgtcaaattaggtttggttcaggcggataccc 7334136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 30266338 - 30266265
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttg 132  Q
    ||||||||||||||||||  |||| || ||||||| |||||||||| | ||| ||||||||   ||||||||||    
T  30266338 caaacccagtcaaatcggagaaaacccgtcaaatcggggttggtttgggcgggtacccatgtgcacgggttttg 30266265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 30285850 - 30285923
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttg 132  Q
    ||||||||||||||||||  |||| || ||||||| |||||||||| | ||| ||||||||   ||||||||||    
T  30285850 caaacccagtcaaatcggagaaaacccgtcaaatcggggttggtttgggcgggtacccatgtgcacgggttttg 30285923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 3505333 - 3505381
Alignment:
Q  37 tattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatcc 85  Q
    ||||||||||||| ||||||||||||| || ||||| ||| ||||||||    
T  3505333 tattttaaaattggggaaaactcaaacacaatcaaaacggaaaaaatcc 3505381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 11173026 - 11173078
Alignment:
Q  25 gtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcggg 77  Q
    ||||| |||| ||||||| |||| | ||||||| |||||||||||||||||||    
T  11173026 gtcccgtacccgtattttgaaatcggggaaaacccaaacccagtcaaatcggg 11173078  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 16216650 - 16216578
Alignment:
Q  63 cccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttg 135  Q
    ||||||||||| |||||||| ||||||||||   |||||||| | ||| ||| |||||  |||||||||||||    
T  16216650 cccagtcaaattgggaaaaacccatcaaatcgaagttggtttgggcgggtactcatgggcacgggttttgttg 16216578  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 20819648 - 20819588
Alignment:
Q  44 aaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggttt 104  Q
    |||||| |||||||||||||||| ||||| |||  |||| || | ||||||||||||||||    
T  20819648 aaattggggaaaactcaaacccaatcaaaacggagaaaacccgttaaatcagggttggttt 20819588  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 53906339 - 53906247
Alignment:
Q  54 aaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagcctagt 146  Q
    |||| |||||||||||||| ||||||||| || ||||||  || ||||||  | |||||| || ||| || ||||||||||| || |||||||    
T  53906339 aaacccaaacccagtcaaaacgggaaaaacccgtcaaattgggtttggttcgggcggataaccgtgggtatgggttttgttgccatgcctagt 53906247  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 26755834 - 26755919
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagccta 144  Q
    |||||||||||||||||||||||| || ||||||| |||||||||| | | | |||||||||  |||||||||||||||| |||||    
T  26755834 caaacccagtcaaatcgggaaaaacccgtcaaatcggggttggtttgggcaggtacccatgggcacgggttttgttgtcatgccta 26755919  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 34320677 - 34320733
Alignment:
Q  29 catacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatcc 85  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||| ||||||||||||    
T  34320677 catacctgtgttttaaaatcgaggaaaactcaaaccgagtcaaagcgggaaaaatcc 34320733  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 35337854 - 35337905
Alignment:
Q  53 aaaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggttt 104  Q
    |||||||||||||| ||||| ||| |||||||||||||||||| ||||||||    
T  35337854 aaaactcaaacccaatcaaaacggaaaaaatccatcaaatcagagttggttt 35337905  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 4428015 - 4428103
Alignment:
Q  56 actcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagccta 144  Q
    |||||||  ||||||||| |||||||| || | ||||| |||||| ||| ||||||||||||||   |||||||||||| ||| |||||    
T  4428015 actcaaattcagtcaaattgggaaaaacccgttaaatcggggttgatttggacggatacccatgagcacgggttttgttttcatgccta 4428103  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 42102679 - 42102619
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatg 119  Q
    |||||||| |||||||||| ||||||||||||||| | |||| ||||| ||| ||||||||    
T  42102679 caaacccaatcaaatcggggaaaatccatcaaatcggtgttgttttaggcgggtacccatg 42102619  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 18485702 - 18485748
Alignment:
Q  31 tacctgtattttaaaattgaggaaaactcaaacccagtcaaatcggg 77  Q
    |||| |||||||||||| ||||| ||| |||||||||||||||||||    
T  18485702 tacccgtattttaaaatcgaggataacccaaacccagtcaaatcggg 18485748  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 6027939 - 6027811
Alignment:
Q  16 ctgttactcgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacc 115  Q
    ||||||| |||| ||||||  | ||||||||| | ||||||| |||||||| ||||| |||| |||| || ||||||  || ||||||  | |||||| |    
T  6027939 ctgttacccgtctcatacccatgttttaaaatcggggaaaacccaaacccaatcaaaacggggaaaacccgtcaaattgggtttggttcgggcggataac 6027840  T
Q  116 catggatacgggttttgttgtcaagccta 144  Q
    || |  || |||||||||||||| |||||    
T  6027839 cacgagtatgggttttgttgtcatgccta 6027811  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 27063432 - 27063517
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagccta 144  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||| | ||| || ||||||  ||||||||||||| || |||||    
T  27063432 caaacccagtcaaattgggaaaaatccgtcaaatcggggttggtttgggcggttatccatgggcacgggttttgttgccatgccta 27063517  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 28309537 - 28309663
Alignment:
Q  18 gttactcgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggataccca 117  Q
    ||||| |||||| |||| ||||||| ||||   ||| ||| |||||| || ||||||| | ||||  ||||||||| |||||||||| | |||||| |||    
T  28309537 gttacccgtcccgtacccgtattttgaaatcagggagaacccaaacctagacaaatcgaggaaaactcatcaaatcggggttggtttgggcggatatcca 28309636  T
Q  118 tggatacgggttttgttgtcaagccta 144  Q
    |||| ||||||||||||| || |||||    
T  28309637 tggacacgggttttgttgccatgccta 28309663  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 27063236 - 27063321
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagccta 144  Q
    |||||||||||||||| || ||||||| ||||||| |||||||||| |  || |||||||||  ||| |||||||||||| |||||    
T  27063236 caaacccagtcaaatcagggaaaatccgtcaaatcggggttggtttgggagggtacccatgggcacgagttttgttgtcatgccta 27063321  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 3920589 - 3920657
Alignment:
Q  24 cgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaat 92  Q
    ||||||||||| || |||| |||| | ||||||| |||||||||||||| ||||||||| |||||||||    
T  3920589 cgtcccataccagtgttttgaaatcggggaaaacccaaacccagtcaaaacgggaaaaacccatcaaat 3920657  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 26004524 - 26004448
Alignment:
Q  16 ctgttactcgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaat 92  Q
    ||||||| |||||||||||    |||| |||| ||||||||| |||||||||||||| ||||||||| |||||||||    
T  26004524 ctgttacccgtcccatacccaagttttgaaatcgaggaaaacccaaacccagtcaaaacgggaaaaacccatcaaat 26004448  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 23533641 - 23533578
Alignment:
Q  29 catacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaat 92  Q
    |||||| ||||||| |||| | ||||||| |||||||||||||||||||||||| || ||||||    
T  23533641 catacccgtattttcaaatcggggaaaacccaaacccagtcaaatcgggaaaaacccgtcaaat 23533578  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 30839129 - 30839043
Alignment:
Q  59 caaacccagtcaaatcggga-aaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagccta 144  Q
    |||||||||||||||||| | |||| || ||||||| ||||||||||   ||| ||| |||||| |||||||||||||||| |||||    
T  30839129 caaacccagtcaaatcggaagaaaacccgtcaaatcggggttggtttgagcgggtactcatggacacgggttttgttgtcatgccta 30839043  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 42005955 - 42006029
Alignment:
Q  24 cgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggt 98  Q
    ||||||||||  || |||| |||||||||||||| ||||| || ||||| ||| |||||||| ||||||| ||||    
T  42005955 cgtcccatacacgtgttttgaaattgaggaaaacccaaactcaatcaaagcggaaaaaatccgtcaaatcggggt 42006029  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 43550449 - 43550339
Alignment:
Q  34 ctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgt 133  Q
    |||| ||||||||  | |||||||||||||||| |||||  ||| |||| || |||||| ||| ||| || |||||| || ||| ||||| | |||||||    
T  43550449 ctgtgttttaaaaacggggaaaactcaaacccaatcaaaatggggaaaacccgtcaaattaggtttgattcagacgggtatccacggatatgagttttgt 43550350  T
Q  134 tgtcaagccta 144  Q
    ||||| |||||    
T  43550349 tgtcatgccta 43550339  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 21702757 - 21702842
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagccta 144  Q
    |||||||||||||| |||||||||||| ||||||  || ||||||  | ||| || ||| ||||| ||||||||||| || |||||    
T  21702757 caaacccagtcaaaacgggaaaaatccgtcaaattgggtttggttcgggcgggtaaccacggatatgggttttgttgccatgccta 21702842  T

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Target: scaffold0008 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 67839 - 67930
Alignment:
Q  56 actcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagcctagtc 147  Q
    |||||||||||||||||||||| |||| |  ||||||| |||||||||| | ||| ||| |||||  ||||||||||||| || ||||||||    
T  67839 actcaaacccagtcaaatcggggaaaacctgtcaaatcggggttggtttgggcgggtactcatgggcacgggttttgttgccatgcctagtc 67930  T

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Target: scaffold0008; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 75682 - 75773
Alignment:
Q  56 actcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagcctagtc 147  Q
    |||||||||||||||||||||| |||| |  ||||||| |||||||||| | ||| ||| |||||  ||||||||||||| || ||||||||    
T  75682 actcaaacccagtcaaatcggggaaaacctgtcaaatcggggttggtttgggcgggtactcatgggcacgggttttgttgccatgcctagtc 75773  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 14410903 - 14410784
Alignment:
Q  18 gttactcgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggataccca 117  Q
    ||||| ||||||||||| || |||| ||||   |||||||||||||| ||||||| |||| ||||||| |||||| ||  ||||||| ||||| || |||    
T  14410903 gttacccgtcccatacccgtgttttgaaatctgggaaaactcaaacctagtcaaaacggg-aaaatccgtcaaattagatttggtttggacgggtaacca 14410805  T
Q  118 tggatacgggttttgttgtca 138  Q
     ||| | ||||||||||||||    
T  14410804 cggacatgggttttgttgtca 14410784  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 18908983 - 18909071
Alignment:
Q  56 actcaaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagccta 144  Q
    |||||||| |||||| |||||||||||||| |||||||  ||||||||| | ||| |||| ||||  ||||||||||||| || |||||    
T  18908983 actcaaactcagtcacatcgggaaaaatccgtcaaatcgaggttggtttgggcgggtacctatgggcacgggttttgttgccatgccta 18909071  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 14034542 - 14034615
Alignment:
Q  18 gttactcgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaa 91  Q
    ||||| |||| ||||| ||| | ||||||| | |||||||||||||||||||||| |||| |||| ||||||||    
T  14034542 gttacccgtctcatacttgtgtcttaaaatcggggaaaactcaaacccagtcaaaacgggtaaaacccatcaaa 14034615  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 14506125 - 14506180
Alignment:
Q  17 tgttactcgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaa 72  Q
    |||||| |||||||||||||| |||| |||| | ||||||| ||||||||||||||    
T  14506125 tgttacccgtcccatacctgtgttttgaaatcggggaaaacccaaacccagtcaaa 14506180  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 2367419 - 2367504
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagccta 144  Q
    |||||| ||||||| ||||||||| |||||||||  || ||||||  ||||| || ||| ||||| ||||||||||| || |||||    
T  2367419 caaacctagtcaaaacgggaaaaacccatcaaattgggtttggttcggacgggtaaccacggatatgggttttgttgccatgccta 2367504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 9458756 - 9458801
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggttt 104  Q
    ||||||||||||||||||| ||||||| |||||||  |||||||||    
T  9458756 caaacccagtcaaatcggggaaaatccgtcaaatcgaggttggttt 9458801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 20610976 - 20610891
Alignment:
Q  60 aaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagcctag 145  Q
    ||||||||| ||||||||||||| || |||||||   |||||||| | ||| |||||||||  |||| |||||||| || ||||||    
T  20610976 aaacccagttaaatcgggaaaaacccgtcaaatcgaagttggttttggcgggtacccatgggcacggtttttgttgccatgcctag 20610891  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 19003661 - 19003576
Alignment:
Q  59 caaacccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagccta 144  Q
    |||||| |||||||||||| |||| || ||||||| |||||| ||| | ||| |||||||||  ||||||||||||| || |||||    
T  19003661 caaacctagtcaaatcggggaaaacccgtcaaatcggggttgctttgggcgggtacccatgggcacgggttttgttgccatgccta 19003576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 37032410 - 37032490
Alignment:
Q  64 ccagtcaaatcgggaaaaatccatcaaatcagggttggtttagacggatacccatggatacgggttttgttgtcaagccta 144  Q
    ||||||||||| ||||||| || |||||||||| ||||||| | |||||| |||||   ||||||||||||| || |||||    
T  37032410 ccagtcaaatcaggaaaaacccgtcaaatcaggattggtttcggcggatatccatgagcacgggttttgttgccatgccta 37032490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 49025718 - 49025794
Alignment:
Q  16 ctgttactcgtcccatacctgtattttaaaattgaggaaaactcaaacccagtcaaatcgggaaaaatccatcaaat 92  Q
    ||||||| ||||||||||| || |||| | || | ||||||| |||||||||||||| | ||||||| |||||||||    
T  49025718 ctgttacccgtcccatacccgtgttttgagatcggggaaaacccaaacccagtcaaaacaggaaaaacccatcaaat 49025794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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