View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_8 (Length: 567)
Name: NF1148_low_8
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-178; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 101 - 425
Target Start/End: Complemental strand, 8571441 - 8571118
Alignment:
| Q |
101 |
ttgaactttgaataatgagataatctttccatgttggtcttgtacacaatcaaaaagggttatttcacatagctaagtactcatttctaattatgacaca |
200 |
Q |
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| T |
8571441 |
ttgaactttgaataatgagataatctttccatgttggtcttgtacacaatcaaaa-gggttatttcacatagctaagtactcatttctaattatgacaca |
8571343 |
T |
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| Q |
201 |
ggggtggtttatgataaattgcaggtaaaatttgactgtccacaaattcgatgacaataaactttctaagcaaatttagagtgttttaaatactgttgaa |
300 |
Q |
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| T |
8571342 |
ggggtggtttatgataaattgcaggtaaaatttgactgtccacaaattcgatgacaataaactttctaagcaaatttagagtgttttaaatactgttgaa |
8571243 |
T |
|
| Q |
301 |
ctaatttttgcactttcatttatataagaaagaatatcattcttgttctgagataggaatgagccaacaagcatatggaaggaactgtattagaaaagaa |
400 |
Q |
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| T |
8571242 |
ctaatttttgcactttcatttatataagaaagaatatcattcttgttctgagataggaatgagccaacaagcatatggaaggaactgtattagaaaagaa |
8571143 |
T |
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| Q |
401 |
tgtcatcctaaagttccataaccat |
425 |
Q |
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| T |
8571142 |
tgtcatcctaaagttccataaccat |
8571118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 8571579 - 8571491
Alignment:
| Q |
8 |
ccaagaatatcagtcttagtaagtaaatgaggacaaggataaagttgaaattttcaaactaattgaatcaatagttgccttcacaaaat |
96 |
Q |
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| T |
8571579 |
ccaaaaatatcagtcttagtaagtaaatgaggacaaggataaagttgaaattttcaaactaattgaatcaatagttgccttcacaaaat |
8571491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 296 - 425
Target Start/End: Complemental strand, 12020332 - 12020203
Alignment:
| Q |
296 |
ttgaactaatttttgcactttcatttatataagaaagaatatcattcttgttctgagataggaatgagccaacaagcatatggaaggaactgtattagaa |
395 |
Q |
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||||||||| |||||||||| ||||||||||||||||||| || || || |||||||||||||||| ||||||||||||| ||||| ||||||| ||| |
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| T |
12020332 |
ttgaactaaattttgcacttaaatttatataagaaagaatagcaatcgtggtctgagataggaatgatgcaacaagcatatgaaaggatctgtatttgaa |
12020233 |
T |
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| Q |
396 |
aagaatgtcatcctaaagttccataaccat |
425 |
Q |
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| T |
12020232 |
aagaatgtcatcataaagttccttaaccat |
12020203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 470 - 561
Target Start/End: Original strand, 12850517 - 12850608
Alignment:
| Q |
470 |
agaaaattgcttcaagaaggattgatcttgatgtcataaaagatgttgatctttacaaaattgaaccatgggatcttgaaggtataggatat |
561 |
Q |
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| T |
12850517 |
agaaaattgcttcaagaaggattgatcttgatgtcataaaagatgttgacctttacaaaattgaaccatgggatcttgaaggtataagatat |
12850608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 489 - 554
Target Start/End: Complemental strand, 42049034 - 42048969
Alignment:
| Q |
489 |
gattgatcttgatgtcataaaagatgttgatctttacaaaattgaaccatgggatcttgaaggtat |
554 |
Q |
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| T |
42049034 |
gattgatctcgatgtcatcaaagacgttgatctctataaaattgaaccatgggatcttcaaggtat |
42048969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 545
Target Start/End: Original strand, 3575063 - 3575122
Alignment:
| Q |
486 |
aaggattgatcttgatgtcataaaagatgttgatctttacaaaattgaaccatgggatct |
545 |
Q |
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|||||||||||||||| |||| |||||||||||||| || || ||||| || |||||||| |
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| T |
3575063 |
aaggattgatcttgatatcattaaagatgttgatctctataagattgagccgtgggatct |
3575122 |
T |
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