View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_80 (Length: 251)
Name: NF1148_low_80
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 8441945 - 8442197
Alignment:
| Q |
1 |
tcgccgagcttggtaactcatgcttgtaacttaagtggtggcattaaggtgttctaacgtgttttgatgtgtgtaaaaaacaagtatagaggtaaggccc |
100 |
Q |
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| T |
8441945 |
tcgccgagcttggtaactcatgcttgtaacttaagtggtggcattaaggtgttctaacgtgttttgatgtgtgtaaaaaaaaagtatagagttaaggccc |
8442044 |
T |
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| Q |
101 |
attttgggtcctgacaaattttattgagcccaaattagtctatttagtccctat-----------aacaaataaaaagatcctatttagtcccttagaaa |
189 |
Q |
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| T |
8442045 |
attttgggtcctgacaaattttatagagcccaaattagtctatttggtccctatttttagtcctcaacaaataaaaagatcctatttagtcccttagaaa |
8442144 |
T |
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| Q |
190 |
ataaatttgagacaatttagtcccatgatcattttttatcatcgaacctatga |
242 |
Q |
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| T |
8442145 |
ataaatttgagacaatttagtcccatgatcattttttatcatcgaacctatga |
8442197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 242
Target Start/End: Original strand, 8443454 - 8443581
Alignment:
| Q |
126 |
gagcccaaattagtctatttagtccctat-----------aacaaataaaaagatcctatttagtcccttagaaaataaatttgagacaatttagtccca |
214 |
Q |
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| T |
8443454 |
gagcccaaattagtctatttagtccctatttttagtcctcaacaaataaaaagaccctatttagtcccttataaaataaattcgagacaatttagtccat |
8443553 |
T |
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| Q |
215 |
tgatcattttttatcatcgaacctatga |
242 |
Q |
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| T |
8443554 |
ggatcgttgtttatcatcgaacctatga |
8443581 |
T |
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