View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_83 (Length: 251)
Name: NF1148_low_83
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_83 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 11294969 - 11295167
Alignment:
| Q |
9 |
tgaaagtggtattagaaaattatgctcatgctgattttattttgggtgtcaaagctaaacaagacgtttatgatcgcatgatagattttttcaatgctca |
108 |
Q |
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| T |
11294969 |
tgaaggtggtattggaaaattatgctcatgctgattttattttaggtgtcaaagctaaacaagacgtttatgatcccatgatagattttttcaatgctca |
11295068 |
T |
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| Q |
109 |
gtgatatttaatggcattattgtgcttcaaataatggtgtacacacatatgtatatagtgtttgtgtgtgttatatttctatgaacactaaaaataaaa |
207 |
Q |
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| T |
11295069 |
ttgatatttaatggcattattgtgcttcaaataatggtgtacacacatatgtatatagtgtttgtgtttgttatatttttataaacactaaaaataaaa |
11295167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 11300922 - 11301117
Alignment:
| Q |
8 |
gtgaaagtggtattagaaaattatgctcatgctgattttattttgggtgtcaaagctaaacaagacgtttatgatcgcatgatagattttttcaatgctc |
107 |
Q |
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| T |
11300922 |
gtgaaagtggtattggaaaattatgctcatactgattttactttgggtgtcaaaactaaacaagacgtttatgatcccatggtagattttttcaatgctc |
11301021 |
T |
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| Q |
108 |
agtgatatttaatggcattattgtgcttcaaataatggtgtacacacatatgtatatagtgtttgtgtgtgttatatttctatgaacactaaaaataaaa |
207 |
Q |
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| T |
11301022 |
agtgatatttaatggcattattatgcttcaaataatggtgcacacacata--tatataatgtt--tgtgtgttatatttctatccacactaaaaataaaa |
11301117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 240
Target Start/End: Original strand, 11295200 - 11295230
Alignment:
| Q |
210 |
gtcaatcctaatcttatccccgtctattcat |
240 |
Q |
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| T |
11295200 |
gtcaatcctaatcttatccccgtctattcat |
11295230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 30912208 - 30912328
Alignment:
| Q |
23 |
gaaaattatgctcatgctgattttattttgggtgtcaaagctaaacaagacgtttatgatcgcatgatagattttttcaatgctcagtgatatttaatgg |
122 |
Q |
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||||||||||| ||||||||||||||| || |||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| || |
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| T |
30912208 |
gaaaattatgcacatgctgattttattatgagtgtcaccgctaaacaagacgtttatgatcccatgatagattttttcaacaaacagtgatatttacagg |
30912307 |
T |
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| Q |
123 |
catta-ttgtgcttcaaataa |
142 |
Q |
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||| | ||||||||||||||| |
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| T |
30912308 |
catcatttgtgcttcaaataa |
30912328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 30905746 - 30905827
Alignment:
| Q |
27 |
attatgctcatgctgattttattttgggtgtcaaagctaaacaagacgtttatgatcgcatgatagattttttcaatgctca |
108 |
Q |
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| T |
30905746 |
attatgcacatgctgattttgttatggccgtcagtgctaaacaagtggtttatgatcccatgatagcttttttcaacgctca |
30905827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 36711566 - 36711480
Alignment:
| Q |
27 |
attatgctcatgctgattttattttgggtgtcaaagctaaacaagacgtttatgatcgcatgatagattttttcaatgctcagtgat |
113 |
Q |
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| T |
36711566 |
attatgcacatcttgattttatattgggtgataatgctaaacaagtcgtttatgatcccatgatagcttttttcaacgctcattgat |
36711480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 36704419 - 36704344
Alignment:
| Q |
27 |
attatgctcatgctgattttattttgggtgtcaaagctaaacaagacgtttatgatcgcatgatagattttttcaa |
102 |
Q |
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||||||| |||||||||||||| ||||| ||| |||||||||| ||||||||||| ||| |||| ||||||||| |
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| T |
36704419 |
attatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccataatagcttttttcaa |
36704344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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