View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_85 (Length: 248)
Name: NF1148_low_85
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_85 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 44808214 - 44808406
Alignment:
| Q |
36 |
tgttcaggttctccatctccttgttaaagtatttcaaaagcttccttcaccagattatctgagcatttgtcagtgtcttatgttcttggatgagccagag |
135 |
Q |
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| T |
44808214 |
tgttcaggttctccgtctccttgttaaagtatttcaaaagcttccttcaccagattatctgagcatttgtcagtgtcttatgttcttggatgagccagag |
44808313 |
T |
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| Q |
136 |
ggtgttgcgagcatattggaaaaacttttacgttctgaaaacaaagatgatcgctcttttggcacttcaaatagcttttgatttggtcgagaat |
229 |
Q |
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| T |
44808314 |
ggggttgcaagcatattggaaaaacttttacgttctgaaaacaaagatgat-gctcttttggcacttcaaatagcttttgatttggtcgagaat |
44808406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 28134946 - 28134754
Alignment:
| Q |
36 |
tgttcaggttctccatctccttgttaaagtatttcaaaagcttccttcaccagattatctgagcatttgtcagtgtcttatgttcttggatgagccagag |
135 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28134946 |
tgttcaggttctccgcctgcttgttaaagtatttcaaaagcttccttcaccagattatctgagcatttgtcagtgtcatatgttcttggatgagccagag |
28134847 |
T |
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| Q |
136 |
ggtgttgcgagcatattggaaaaacttttacgttctgaaaacaaagatgatcgctcttttggcacttcaaatagcttttgatttggtcgagaat |
229 |
Q |
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| T |
28134846 |
ggggttgcgagcatattggaaaaacttttacgttctgaaaacaaagatgat-gctcttttggcacttcaaatagcttttgatttggtcgagaat |
28134754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 37 - 225
Target Start/End: Original strand, 2231697 - 2231884
Alignment:
| Q |
37 |
gttcaggttctccatctccttgttaaagtatttcaaaagcttccttcaccagattatctgagcatttgtcagtgtcttatgttcttggatgagccagagg |
136 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2231697 |
gttcaggttctccgtctccttgttaaagtatttcaaaagcttccatcaccagattatctgagcatttgtcagtgtcttatgttcttggatgagctagagg |
2231796 |
T |
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| Q |
137 |
gtgttgcgagcatattggaaaaacttttacgttctgaaaacaaagatgatcgctcttttggcacttcaaatagcttttgatttggtcga |
225 |
Q |
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| T |
2231797 |
gggttgcgagcatattggaaaaacttttacgttgtgaaaacaaagatgat-gctcttttggcacttcaaatagcttttgatttggtcga |
2231884 |
T |
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