View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_88 (Length: 223)
Name: NF1148_low_88
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 12850481 - 12850608
Alignment:
| Q |
75 |
ccacagatgaggagcttgttgattactaccttaggaagaaaattgcttcaagaaggattgatcttgatgtcataaaagatgttgatctttacaaaattga |
174 |
Q |
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| T |
12850481 |
ccacagatgaagaacttgtggattactaccttaggaagaaaattgcttcaagaaggattgatcttgatgtcataaaagatgttgacctttacaaaattga |
12850580 |
T |
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| Q |
175 |
accatgggatcttgaaggtataggatat |
202 |
Q |
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| T |
12850581 |
accatgggatcttgaaggtataagatat |
12850608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 42049075 - 42048969
Alignment:
| Q |
89 |
cttgttgattactaccttaggaagaaaattgcttcaagaaggattgatcttgatgtcataaaagatgttgatctttacaaaattgaaccatgggatcttg |
188 |
Q |
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| T |
42049075 |
cttgttgattactacctcaggaagaaggtatcgtctaaaaagattgatctcgatgtcatcaaagacgttgatctctataaaattgaaccatgggatcttc |
42048976 |
T |
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| Q |
189 |
aaggtat |
195 |
Q |
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||||||| |
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| T |
42048975 |
aaggtat |
42048969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 186
Target Start/End: Original strand, 3575011 - 3575122
Alignment:
| Q |
75 |
ccacagatgaggagcttgttgattactaccttaggaagaaaattgcttcaagaaggattgatcttgatgtcataaaagatgttgatctttacaaaattga |
174 |
Q |
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|||| ||||| || ||||||||| ||||||||||||| || || ||||| | |||||||||||||||| |||| |||||||||||||| || || ||||| |
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| T |
3575011 |
ccactgatgaagaacttgttgatcactaccttaggaaaaagatagcttctaaaaggattgatcttgatatcattaaagatgttgatctctataagattga |
3575110 |
T |
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| Q |
175 |
accatgggatct |
186 |
Q |
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| T |
3575111 |
gccgtgggatct |
3575122 |
T |
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