View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_9 (Length: 549)
Name: NF1148_low_9
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 47 - 541
Target Start/End: Original strand, 45059263 - 45059757
Alignment:
| Q |
47 |
cacatatttctggtataatgaggttggattcacttggtaatgaatttggttgttctgttttaccaccacttactgatacgtcgaattcaattgggaaaat |
146 |
Q |
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| T |
45059263 |
cacatatttctggtataatgaggttggattcacttggtaatgaatttggttgttctgttttaccaccacttactgattcgtcgaattcaattgggaaaat |
45059362 |
T |
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| Q |
147 |
caaacaattgaatgattcagcttacgtgtcctgcttctccaactcaattgatgttcaaagaaaccaaggagggatctttgattcattcaacaactcaatt |
246 |
Q |
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| T |
45059363 |
caaacaattgaatgattcagcttacgtgtcctgcttctccaactcaattgatgttcaaagaaaccaaggagggatctttgattcattcaacaactcaatt |
45059462 |
T |
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| Q |
247 |
tatggtgtttcttcacataatcaactagattttttcccaagaatctcatcttctaatggttcattatactctaataatcaagctgcggttaatttgcaat |
346 |
Q |
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| T |
45059463 |
tatggtatttcttcacataatcaactagattttttcccaagaatctcatcttctaatggttcattatactctaataatcaagctgcggttaatttgcaat |
45059562 |
T |
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| Q |
347 |
atccaagttctgtttgtggtatgcaagatcaagcaattttaagagctttgtatgaaaacaatggtttcaagactgagagacagcaacaaattatgagtgt |
446 |
Q |
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| T |
45059563 |
atccaagttctgtttgtggtatgcaagatcaagcaattttaagagctttgtatgaaaacaatggtttcaagactgagagacagcaacaaattatgagtgt |
45059662 |
T |
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| Q |
447 |
gtcacaggaaactgatctaactactgatatgaatgctgaaacatgttctgttgtgtcaaattttgatattggtagaaggacttttgagaataatc |
541 |
Q |
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| T |
45059663 |
gtcacaggaaactgatctaactactgatatgaatgctgaaacatgttctgttgtgtcaaatttggatattggtagaaggacttttgagaataatc |
45059757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 438
Target Start/End: Original strand, 35363242 - 35363283
Alignment:
| Q |
397 |
tatgaaaacaatggtttcaagactgagagacagcaacaaatt |
438 |
Q |
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| T |
35363242 |
tatgaaaacaatggtttcaaaactgagagataacaacaaatt |
35363283 |
T |
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