View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1148_low_92 (Length: 211)
Name: NF1148_low_92
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1148_low_92 |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 8441380 - 8441495
Alignment:
| Q |
1 |
aatgatgataatttgatcaacaagttaaaagacaaccaaagcatgaaatggttgaaaagctgattccaacaccata-ggacctaaccaaaccttatattt |
99 |
Q |
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| T |
8441380 |
aatgatgtcaatttgatcaacaagttaaaagacaaccaaagcatgaaatggttgaaaagttgattccaacaccatagggacctaaccaaaccttatattt |
8441479 |
T |
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| Q |
100 |
tcaatagcagtattat |
115 |
Q |
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| T |
8441480 |
tcaacagcagtgttat |
8441495 |
T |
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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 8443177 - 8443242
Alignment:
| Q |
32 |
acaaccaaagcatgaaatggttg-aaaagctgattccaacaccata-ggacctaaccaaaccttat |
95 |
Q |
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| T |
8443177 |
acaaccaaagcatgaaagggttgcaaaagctgatttcaacatcatagggacctagccaaaccttat |
8443242 |
T |
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