View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1148_low_94 (Length: 209)

Name: NF1148_low_94
Description: NF1148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1148_low_94
NF1148_low_94
[»] chr4 (56 HSPs)
chr4 (16-206)||(27524566-27524756)
chr4 (68-209)||(27412703-27412844)
chr4 (16-206)||(27475486-27475677)
chr4 (68-206)||(27503964-27504102)
chr4 (16-209)||(27478790-27478984)
chr4 (17-206)||(27468235-27468425)
chr4 (69-206)||(27563307-27563444)
chr4 (66-209)||(27425851-27425994)
chr4 (71-207)||(27415662-27415798)
chr4 (68-206)||(27420450-27420588)
chr4 (17-206)||(27514933-27515123)
chr4 (69-206)||(27585730-27585867)
chr4 (39-209)||(27506737-27506907)
chr4 (68-204)||(27497282-27497418)
chr4 (68-204)||(27508896-27509032)
chr4 (68-207)||(27565911-27566050)
chr4 (68-207)||(27423263-27423402)
chr4 (74-209)||(27485909-27486044)
chr4 (83-206)||(27570024-27570147)
chr4 (68-204)||(27490004-27490140)
chr4 (76-209)||(27527200-27527329)
chr4 (108-206)||(27411456-27411554)
chr4 (99-206)||(27414295-27414402)
chr4 (99-206)||(27567297-27567404)
chr4 (100-206)||(27421923-27422033)
chr4 (108-209)||(27444794-27444895)
chr4 (99-184)||(27559231-27559316)
chr4 (98-204)||(17970343-17970449)
chr4 (108-206)||(27424514-27424612)
chr4 (108-206)||(27479943-27480041)
chr4 (108-206)||(27487025-27487123)
chr4 (108-209)||(27431148-27431249)
chr4 (108-164)||(27495620-27495676)
chr4 (110-209)||(27501356-27501455)
chr4 (70-209)||(27513738-27513877)
chr4 (98-209)||(27557528-27557639)
chr4 (109-207)||(27498456-27498554)
chr4 (108-206)||(27526112-27526210)
chr4 (109-206)||(27571665-27571762)
chr4 (99-206)||(27419062-27419169)
chr4 (99-198)||(27556370-27556469)
chr4 (108-199)||(27595434-27595525)
chr4 (108-206)||(27505702-27505800)
chr4 (108-207)||(27469501-27469600)
chr4 (108-207)||(27500338-27500437)
chr4 (110-209)||(27502809-27502908)
chr4 (108-150)||(27460576-27460618)
chr4 (92-145)||(27437237-27437290)
chr4 (98-159)||(27446236-27446297)
chr4 (109-150)||(27473990-27474031)
chr4 (110-193)||(27554364-27554447)
chr4 (108-150)||(27466919-27466961)
chr4 (73-135)||(27548961-27549023)
chr4 (108-165)||(27502135-27502192)
chr4 (100-140)||(27540115-27540155)
chr4 (99-159)||(27600642-27600702)
[»] chr5 (2 HSPs)
chr5 (16-209)||(1756664-1756858)
chr5 (68-209)||(1754727-1754868)
[»] chr3 (12 HSPs)
chr3 (69-201)||(55084833-55084965)
chr3 (94-204)||(50910004-50910114)
chr3 (101-204)||(38024868-38024971)
chr3 (101-204)||(38031320-38031423)
chr3 (102-204)||(50911863-50911965)
chr3 (98-203)||(48840702-48840806)
chr3 (108-201)||(50904792-50904885)
chr3 (101-204)||(38028759-38028862)
chr3 (102-204)||(38043947-38044049)
chr3 (101-204)||(38040074-38040177)
chr3 (107-203)||(38036792-38036888)
chr3 (68-204)||(38033735-38033875)
[»] chr8 (3 HSPs)
chr8 (100-204)||(21607288-21607392)
chr8 (98-183)||(21634608-21634693)
chr8 (101-204)||(21604747-21604850)
[»] chr2 (1 HSPs)
chr2 (98-204)||(3073613-3073719)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 56)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 27524756 - 27524566
Alignment:
Q  16 atgtctcaactaatctagctatttcagtatgttaaagtgtaaggttcaagggccattcaagcaagaagttatatgttggaagacatcttcagtgcaagga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||    
T  27524756 atgtctcaactaatctagctatttcagtatgttaaagtgtaaggttcaagggccattcaagcatgaagttatatgttggaagacatcttcggtgcacgga 27524657  T
Q  116 atggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgata 206  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| | ||||||||||| |||||||    
T  27524656 atggtgaggccacccattggatgatcatatccaaactcttcctcagcttgattcaacaagtcttgaaatgaaggttggttcaaatatgata 27524566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 27412844 - 27412703
Alignment:
Q  68 ccattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgac 167  Q
    |||||| ||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27412844 ccattcgagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgac 27412745  T
Q  168 tcaataagtcttgaaataatggttggttcaagtatgatattg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27412744 tcaataagtcttgaaataatggttggttcaagtatgatattg 27412703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 27475486 - 27475677
Alignment:
Q  16 atgtctcaactaatctagc-tatttcagtatgttaaagtgtaaggttcaagggccattcaagcaagaagttatatgttggaagacatcttcagtgcaagg 114  Q
    ||||||||||||||||||  ||| ||||||||||| | | |||| ||||  | |||||||||||||||||||||||||||||||||||||| | ||||||    
T  27475486 atgtctcaactaatctagtgtatgtcagtatgttacaatataagattcatagcccattcaagcaagaagttatatgttggaagacatcttcggagcaagg 27475585  T
Q  115 aatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgata 206  Q
    |||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||| | ||||| |||||||||||||    
T  27475586 aatggtgaggccacccatgggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27475677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 27504102 - 27503964
Alignment:
Q  68 ccattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgac 167  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  27504102 ccattcaagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgac 27504003  T
Q  168 tcaataagtcttgaaataatggttggttcaagtatgata 206  Q
    |||| |||||||||||| | |||||||||||||||||||    
T  27504002 tcaacaagtcttgaaatgaaggttggttcaagtatgata 27503964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 27478790 - 27478984
Alignment:
Q  16 atgtctcaactaatctagc-tatttcagtatgttaaagtgtaaggttcaagggccattcaagcaagaagttatatgttggaagacatcttcagtgcaagg 114  Q
    |||||||| |||||||||| ||| ||||||||||| ||||||||  |||  | ||||||||||||||||||||||||||||| |||||||| | ||||||    
T  27478790 atgtctcagctaatctagcgtatatcagtatgttacagtgtaagaatcatagcccattcaagcaagaagttatatgttggaacacatcttcggagcaagg 27478889  T
Q  115 aatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatattg 209  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||   |  || |||||||| |||||||||||||||||||||||||    
T  27478890 aatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatattg 27478984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 27468235 - 27468425
Alignment:
Q  17 tgtctcaactaatctag-ctatttcagtatgttaaagtgtaaggttcaagggccattcaagcaagaagttatatgttggaagacatcttcagtgcaagga 115  Q
    |||||||| |||||||| |||| | |||||| || |||||||| ||||  | ||||||||| ||||| |||||||||||||||||||||| |||||||||    
T  27468235 tgtctcaattaatctagtctatgtgagtatgctacagtgtaagattcatagtccattcaaggaagaaattatatgttggaagacatcttccgtgcaagga 27468334  T
Q  116 atggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgata 206  Q
    ||||||||||||||||| ||||||||||||||||| ||||| || | ||||||||| |||||||||||| | |||||||| ||||||||||    
T  27468335 atggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttggtttaagtatgata 27468425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 69 - 206
Target Start/End: Original strand, 27563307 - 27563444
Alignment:
Q  69 cattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgact 168  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27563307 cattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttcggcttgact 27563406  T
Q  169 caataagtcttgaaataatggttggttcaagtatgata 206  Q
    ||  || |||||||| |||| |||||||||||||||||    
T  27563407 cagcaaatcttgaaacaatgtttggttcaagtatgata 27563444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 66 - 209
Target Start/End: Complemental strand, 27425994 - 27425851
Alignment:
Q  66 ggccattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttg 165  Q
    |||||||||||| ||| || |||||||| || ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |||  |||    
T  27425994 ggccattcaagcgagatgtcatatgttgaaatacatcctcggtgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaaattg 27425895  T
Q  166 actcaataagtcttgaaataatggttggttcaagtatgatattg 209  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  27425894 actcaataagtcttgaaatgatggttggttcaagtatgatattg 27425851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 27415798 - 27415662
Alignment:
Q  71 ttcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactca 170  Q
    ||||||| ||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||    
T  27415798 ttcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccacccatggaatgatcatatccaaactcttcctcagcttgactca 27415699  T
Q  171 ataagtcttgaaataatggttggttcaagtatgatat 207  Q
    | |||||||||||  ||||||||||||||||||||||    
T  27415698 acaagtcttgaaacgatggttggttcaagtatgatat 27415662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 27420588 - 27420450
Alignment:
Q  68 ccattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgac 167  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  27420588 ccattgaagcaagaagttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaacttgac 27420489  T
Q  168 tcaataagtcttgaaataatggttggttcaagtatgata 206  Q
    |||  ||| |||||||| | |||||| ||||||||||||    
T  27420488 tcagcaagccttgaaatgaaggttggctcaagtatgata 27420450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 27515123 - 27514933
Alignment:
Q  17 tgtctcaactaatctag-ctatttcagtatgttaaagtgtaaggttcaagggccattcaagcaagaagttatatgttggaagacatcttcagtgcaagga 115  Q
    |||||||| |||||||| |||| | |||||| || |||||||| ||||  | ||||||||| ||||| ||||||| |||||||||||||| || ||||||    
T  27515123 tgtctcaattaatctagtctatgtgagtatgctacagtgtaagattcatagtccattcaaggaagaaattatatgctggaagacatcttctgtacaagga 27515024  T
Q  116 atggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgata 206  Q
    ||||||||||||||||| ||||||||||||||||| ||||| || | ||||||||| |||||||||||| | ||||| |||||||||||||    
T  27515023 atggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27514933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 27585867 - 27585730
Alignment:
Q  69 cattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgact 168  Q
    ||||||||| | |||||||||||| |||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||    
T  27585867 cattcaagcgataagttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggcttgact 27585768  T
Q  169 caataagtcttgaaataatggttggttcaagtatgata 206  Q
    ||  || |||||||| ||||||||||||||||||||||    
T  27585767 catcaaatcttgaaacaatggttggttcaagtatgata 27585730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 39 - 209
Target Start/End: Complemental strand, 27506907 - 27506737
Alignment:
Q  39 tcagtatgttaaagtgtaaggttcaagggccattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatg 138  Q
    |||||||| |||||||| || || | ||  ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||    
T  27506907 tcagtatgctaaagtgtcagatttatggctcattcaagcaagaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatg 27506808  T
Q  139 atcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatattg 209  Q
    |||||||||||| |||||||| ||||||   |  || |||||||| ||||||||||| |||||||||||||    
T  27506807 atcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatattg 27506737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 27497282 - 27497418
Alignment:
Q  68 ccattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgac 167  Q
    |||||||||| |||||||||  |||||||||||| |||||||||||||||||||||||||||  | ||||||||||||||||||||||| ||||||||||    
T  27497282 ccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatggtgaggccacctgtgggatgatcatatccaaactcttcctcagcttgac 27497381  T
Q  168 tcaataagtcttgaaataatggttggttcaagtatga 204  Q
    |||| || | |||||| ||||||||||| ||||||||    
T  27497382 tcaacaaatattgaaacaatggttggtttaagtatga 27497418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 27509032 - 27508896
Alignment:
Q  68 ccattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgac 167  Q
    ||||| ||||||||||||||||||||||| |||||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||     
T  27509032 ccattgaagcaagaagttatatgttggaacacatcttcggagcatggaatggtgaggccacccgttggatgatcatatccaaactcttcctcagcctgat 27508933  T
Q  168 tcaataagtcttgaaataatggttggttcaagtatga 204  Q
    |||| |||||||||||| | ||||||||||| |||||    
T  27508932 tcaacaagtcttgaaatgaaggttggttcaaatatga 27508896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 68 - 207
Target Start/End: Original strand, 27565911 - 27566050
Alignment:
Q  68 ccattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgac 167  Q
    ||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||  |||||| ||| ||||      
T  27565911 ccattcaagcaagaagttatatgttggaagacatcttcgccacaaggaatggtgaggccacccattggatgatcatatccatgctcttcctcaacttgta 27566010  T
Q  168 tcaataagtcttgaaataatggttggttcaagtatgatat 207  Q
    |||  ||||||||||| ||||||||||||| |||||||||    
T  27566011 tcagcaagtcttgaaacaatggttggttcaggtatgatat 27566050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 207
Target Start/End: Complemental strand, 27423402 - 27423263
Alignment:
Q  68 ccattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgac 167  Q
    |||||||||  |||||||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||||  || ||||||||||| || |||||||    
T  27423402 ccattcaagtgagaagttatatgttggaaaacatcttccgtgcaaggaacggtgaggccacccatgggatgattgtaaccaaactcttcctcggcttgac 27423303  T
Q  168 tcaataagtcttgaaataatggttggttcaagtatgatat 207  Q
    |||| || ||||||||| | ||||||||||||||||||||    
T  27423302 tcaacaattcttgaaatgaaggttggttcaagtatgatat 27423263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 27485909 - 27486044
Alignment:
Q  74 aagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaata 173  Q
    |||||||||||||  ||||| |||||  ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||   |  |    
T  27485909 aagcaagaagttacgtgttgaaagacgccttcagtgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagca 27486008  T
Q  174 agtcttgaaataatggttggttcaagtatgatattg 209  Q
    | |||||||| |||||||||||||||||||||||||    
T  27486009 attcttgaaacaatggttggttcaagtatgatattg 27486044  T

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Target: chr4; HSP #19
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 27570024 - 27570147
Alignment:
Q  83 gttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaa 182  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||  ||||||||||    
T  27570024 gttatatgttgaaagatatcttcggtgcaaggaatggtgaggccacccatgggatgatcatatccgaactcttcctcagcttgactcagcaagtcttgaa 27570123  T
Q  183 ataatggttggttcaagtatgata 206  Q
    || | |||||| | ||||||||||    
T  27570124 atgaaggttggcttaagtatgata 27570147  T

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Target: chr4; HSP #20
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 27490140 - 27490004
Alignment:
Q  68 ccattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgac 167  Q
    ||||| |||| |||| |||| | ||||||| |||||||  ||  ||||||||||||||||||||||||||||||||||||||||||||| || ||||||     
T  27490140 ccattaaagcgagaaattatgtattggaagtcatcttcgttgacaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgat 27490041  T
Q  168 tcaataagtcttgaaataatggttggttcaagtatga 204  Q
    |||| || ||||||||| |||||| ||| ||||||||    
T  27490040 tcaacaaatcttgaaatgatggtttgtttaagtatga 27490004  T

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Target: chr4; HSP #21
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 76 - 209
Target Start/End: Complemental strand, 27527329 - 27527200
Alignment:
Q  76 gcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataag 175  Q
    ||||||||||||||||||||||||||||||| |||||||||| | ||     ||||| ||||||||||||||||||||||| |||||||||||||  ||     
T  27527329 gcaagaagttatatgttggaagacatcttcactgcaaggaattgggat----cccatgggatgatcatatccaaactcttcctcagcttgactcagcaac 27527234  T
Q  176 tcttgaaataatggttggttcaagtatgatattg 209  Q
    ||| ||||  |||||||||| |||| ||||||||    
T  27527233 tctagaaacgatggttggtttaagtgtgatattg 27527200  T

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Target: chr4; HSP #22
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 27411456 - 27411554
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgata 206  Q
    |||||||||| ||||| |||||||| ||||||||||||||||| |||||||| |||||| | | ||| ||||||||  |||||||||||||||||||||    
T  27411456 tgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaagtatgata 27411554  T

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Target: chr4; HSP #23
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 27414295 - 27414402
Alignment:
Q  99 catcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaa 198  Q
    |||||||| |||| ||||| || || |||||||||||||||||||||||||| |||||||| | |||| | | ||| ||||||||| | |||||||||||    
T  27414295 catcttcactgcacggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaa 27414394  T
Q  199 gtatgata 206  Q
    ||||||||    
T  27414395 gtatgata 27414402  T

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Target: chr4; HSP #24
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 27567404 - 27567297
Alignment:
Q  99 catcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaa 198  Q
    |||||||  |||||||||| ||||| |||||||||||||||||||| ||||| |||||||| | |||| | | ||| ||||||||  |||||||||||||    
T  27567404 catcttcgctgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatggttggttcaa 27567305  T
Q  199 gtatgata 206  Q
    ||||||||    
T  27567304 gtatgata 27567297  T

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Target: chr4; HSP #25
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 27421923 - 27422033
Alignment:
Q  100 atcttcagtgcaaggaatggtgaggccacccattggatgatcatatcca----aactcttcttcagcttgactcaataagtcttgaaataatggttggtt 195  Q
    ||||||| |||||||||| ||||| |||||| |||||||||| ||||||    || |||||||| |||||| | | ||| ||||||||||||||||||||    
T  27421923 atcttcactgcaaggaattgtgagaccacccgttggatgatcgtatccatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggtt 27422022  T
Q  196 caagtatgata 206  Q
    |||||||||||    
T  27422023 caagtatgata 27422033  T

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Target: chr4; HSP #26
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 27444794 - 27444895
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatat 207  Q
    |||||||||| ||||| |||||||||||||| |||||||| || | ||| || |||||| ||||||| ||||||||| ||| |||| |||||||||||||    
T  27444794 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatat 27444893  T
Q  208 tg 209  Q
    ||    
T  27444894 tg 27444895  T

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Target: chr4; HSP #27
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 27559231 - 27559316
Alignment:
Q  99 catcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaat 184  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||| || ||||| | |||||||    
T  27559231 catcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaactcttcttctgattggcttaataactattgaaat 27559316  T

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Target: chr4; HSP #28
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 17970449 - 17970343
Alignment:
Q  98 acatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttca 197  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| ||||| || ||||| || ||  ||||||  |||| ||||||| | | ||||||||    
T  17970449 acatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggttca 17970350  T
Q  198 agtatga 204  Q
    |||||||    
T  17970349 agtatga 17970343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 27424514 - 27424612
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgata 206  Q
    |||| |||||||| || |||||||||||||||||||||||| | |||||||||| |||| | |  || ||||||||| | |||||||||||||||||||    
T  27424514 tgcacggaatggtaagaccacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgata 27424612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 27480041 - 27479943
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgata 206  Q
    |||||||||||||||| ||||||||||||||||||||| |||| | ||| ||||||||  |||| || | ||| ||| ||| |||||||||||||||||    
T  27480041 tgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaacttttggaatgatgtttggttcaagtatgata 27479943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 27487123 - 27487025
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgata 206  Q
    |||||||||| || || ||||||||||||||||||||| |||| | ||||||||||||  |||| || ||||||||  |||||||||| ||||||||||    
T  27487123 tgcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagcttggttcaacaattcttgaaacgatggttggtttaagtatgata 27487025  T

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Target: chr4; HSP #32
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 27431148 - 27431249
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatat 207  Q
    |||||||||| ||||| |||||  ||||||| ||||||||||| | ||| || |||||| |||| || ||||||||| | ||||||||||||||||||||    
T  27431148 tgcaaggaattgtgagaccaccggttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat 27431247  T
Q  208 tg 209  Q
    ||    
T  27431248 tg 27431249  T

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Target: chr4; HSP #33
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 27495676 - 27495620
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagctt 164  Q
    |||||||||||||||| |||||||||||||||| | |||||||||||||||||||||    
T  27495676 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 27495620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 27501455 - 27501356
Alignment:
Q  110 caaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatattg 209  Q
    |||||||| ||||| |||||| |||||||||| ||| |||| | ||| || |||||  |||| ||||||||||| ||||||||||| |||||||||||||    
T  27501455 caaggaatagtgagaccacccgttggatgatcgtattcaaattgttcctcggcttggttcaacaagtcttgaaacaatggttggtttaagtatgatattg 27501356  T

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Target: chr4; HSP #35
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 27513738 - 27513877
Alignment:
Q  70 attcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactc 169  Q
    |||||||| |||||| |||| |  ||| || |||||  |||||||||| ||||| ||||||||||||||||||||| || | | ||||||||||||  ||    
T  27513738 attcaagcgagaagtgatatctaagaatacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagcttggttc 27513837  T
Q  170 aataagtcttgaaataatggttggttcaagtatgatattg 209  Q
    || || ||||| ||  | | ||||||||||||||||||||    
T  27513838 aacaattcttggaacgaggtttggttcaagtatgatattg 27513877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 27557639 - 27557528
Alignment:
Q  98 acatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttca 197  Q
    ||||||||  |||| ||||| ||||| ||||||||||||||| ||||| |||| | ||| ||||||||| |||  || ||||||||| |||||||||| |    
T  27557639 acatcttctctgcatggaatagtgagaccacccattggatgaacatattcaaattgttcctcagcttgattcagcaattcttgaaatgatggttggttta 27557540  T
Q  198 agtatgatattg 209  Q
    ||||||| ||||    
T  27557539 agtatgacattg 27557528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 27498554 - 27498456
Alignment:
Q  109 gcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatat 207  Q
    ||||||||| ||||| ||||||||||||||||||||| | || | ||| || |||||  |||| |||||||| ||  ||||||||||||||||||||||    
T  27498554 gcaaggaatagtgagaccacccattggatgatcatattcgaattgttcctcggcttggttcaacaagtcttggaacgatggttggttcaagtatgatat 27498456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 27526112 - 27526210
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgata 206  Q
    |||||||||| ||||| |||||| |||||||||||||| |||| | ||| |||||||| ||||| || ||||| ||| | | |||||||||||||||||    
T  27526112 tgcaaggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagcttggctcaacaattcttggaatgaggtttggttcaagtatgata 27526210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 27571762 - 27571665
Alignment:
Q  109 gcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgata 206  Q
    ||||||||| ||||| |||||||||||||||||||||||||| |||||||| | |||| | | ||| ||||||||  |||| ||| |||| |||||||    
T  27571762 gcaaggaattgtgagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgata 27571665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 27419062 - 27419169
Alignment:
Q  99 catcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaa 198  Q
    ||||||||  ||||||||| || || |||||||||||||||||||||||||| |||||||| | |||| | | ||| ||||||||  |||| ||| ||||    
T  27419062 catcttcaccgcaaggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaa 27419161  T
Q  199 gtatgata 206  Q
     |||||||    
T  27419162 atatgata 27419169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 27556370 - 27556469
Alignment:
Q  99 catcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaa 198  Q
    |||||||| |||| ||||| ||||| |||||||| | ||||||||||||||| |||||||| ||||||   | ||| ||||||||| | |||||||||||    
T  27556370 catcttcactgcatggaattgtgagaccacccatagaatgatcatatccaaattcttcttctgcttgatgtagtaattcttgaaatgaaggttggttcaa 27556469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 27595525 - 27595434
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaag 199  Q
    |||||||||| || || |||||||| |||||||   |||||||||||| ||| |||||||| | ||| ||||||||||||||| ||||||||    
T  27595525 tgcaaggaattgtaagaccacccatgggatgattgaatccaaactctttttctgcttgacttagtaattcttgaaataatggtcggttcaag 27595434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 27505702 - 27505800
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgata 206  Q
    |||||||||| ||||| |||||||||||||| |||||| |||| | ||| ||||||||  |||| || ||||| ||| | | |||||||||||||||||    
T  27505702 tgcaaggaatagtgagaccacccattggatggtcatattcaaattgttcctcagcttggttcaacaattcttggaatgaggtttggttcaagtatgata 27505800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 27469600 - 27469501
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatat 207  Q
    |||||||||| || || |||||||||||||| |||||| |||| | |||||||||||| ||||| |  ||||| ||| ||| ||| ||||| ||||||||    
T  27469600 tgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagttcttgtaatgatgtttgcttcaaatatgatat 27469501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 27500338 - 27500437
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatat 207  Q
    |||||||||| |||| ||||||||||||||| |||||||| |||| |||||||| ||| ||||  || ||||| ||| |   |||||| |||||||||||    
T  27500338 tgcaaggaatagtgatgccacccattggatggtcatatccgaactgttcttcagattggctcagcaattcttggaatgaactttggtttaagtatgatat 27500437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 209
Target Start/End: Original strand, 27502809 - 27502908
Alignment:
Q  110 caaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatattg 209  Q
    |||||||| || || |||||||||||||| ||||||||||| |||||  ||||||| ||||  |||||||||||| | | ||| ||||| ||||| ||||    
T  27502809 caaggaatagtaagaccacccattggatggtcatatccaaattcttccacagcttggctcagcaagtcttgaaatgaagtttgattcaaatatgacattg 27502908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 27460618 - 27460576
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaa 150  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  27460618 tgcaaggaatggtgagaccacccattggatgatcatattcaaa 27460576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 27437290 - 27437237
Alignment:
Q  92 tggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatat 145  Q
    |||||||||||||| ||||||||||| |  |||||| |||||||||||||||||    
T  27437290 tggaagacatcttcggtgcaaggaataggaaggccaaccattggatgatcatat 27437237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 27446297 - 27446236
Alignment:
Q  98 acatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttc 159  Q
    ||||||||| |||||||||| | ||| ||| ||||| ||||||||||| |||||||||||||    
T  27446297 acatcttcactgcaaggaatcgagagaccatccattcgatgatcatattcaaactcttcttc 27446236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 27474031 - 27473990
Alignment:
Q  109 gcaaggaatggtgaggccacccattggatgatcatatccaaa 150  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  27474031 gcaaggaatggtgagaccacccattggatgatcatattcaaa 27473990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 27554447 - 27554364
Alignment:
Q  110 caaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttgg 193  Q
    |||||||| ||||| | |||| ||||||||||||||||||| | ||| ||||||||| |||  || ||||||||  ||||||||    
T  27554447 caaggaattgtgagactacccgttggatgatcatatccaaattgttcctcagcttgattcagcaattcttgaaacgatggttgg 27554364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 27466961 - 27466919
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaa 150  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  27466961 tgcaaggaatagtgagaccacccattggatgatcatattcaaa 27466919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 27548961 - 27549023
Alignment:
Q  73 caagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattgg 135  Q
    ||||| ||| ||||| || |||||||||||||| ||||||| ||| ||||||||| |||||||    
T  27548961 caagcgagacgttatgtgctggaagacatcttcggtgcaagaaatagtgaggccaaccattgg 27549023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 27502135 - 27502192
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttg 165  Q
    |||||||||| || || ||||||||||||||||||||| |||| | ||| ||||||||    
T  27502135 tgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcagcttg 27502192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 27540155 - 27540115
Alignment:
Q  100 atcttcagtgcaaggaatggtgaggccacccattggatgat 140  Q
    ||||||| ||||||||||||| || ||||||||||||||||    
T  27540155 atcttcactgcaaggaatggttagtccacccattggatgat 27540115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 27600702 - 27600642
Alignment:
Q  99 catcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttc 159  Q
    |||||||  |||||||||| ||||| ||||||||||||||||  || ||||| ||||||||    
T  27600702 catcttctttgcaaggaattgtgagaccacccattggatgattgtaaccaaattcttcttc 27600642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 1756664 - 1756858
Alignment:
Q  16 atgtctcaactaatctag-ctatttcagtatgttaaagtgtaaggttcaagggccattcaagcaagaagttatatgttggaagacatcttcagtgcaagg 114  Q
    |||||| ||||||||| | |||| |||||||| || |||  ||| ||||  | |||||||||||||| || |||||||||||| ||||||| ||||||||    
T  1756664 atgtctaaactaatctggtctatgtcagtatgctacagtaaaagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaagg 1756763  T
Q  115 aatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatattg 209  Q
    |||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |||| ||||||  ||||||||||||||||||||||||    
T  1756764 aatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtattgaaacgatggttggttcaagtatgatattg 1756858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 1754868 - 1754727
Alignment:
Q  68 ccattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgac 167  Q
    ||||| |||| ||||||||||| || |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  1754868 ccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttccgcagcttgac 1754769  T
Q  168 tcaataagtcttgaaataatggttggttcaagtatgatattg 209  Q
    |||| |||  ||||||  ||||||| ||||||||||||||||    
T  1754768 tcaacaaggattgaaacgatggttgattcaagtatgatattg 1754727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 55084965 - 55084833
Alignment:
Q  69 cattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgact 168  Q
    |||| |||| |||||| |||||   ||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||| || ||  ||||    
T  55084965 cattgaagcgagaagtaatatgaaagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccaaattcttcctccgcccgact 55084866  T
Q  169 caataagtcttgaaataatggttggttcaagta 201  Q
    ||| |||||||||||| ||||||||||||||||    
T  55084865 caacaagtcttgaaatgatggttggttcaagta 55084833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 50910114 - 50910004
Alignment:
Q  94 gaagacatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttgg 193  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||  ||||| |||| |||| ||||||| | | ||||    
T  50910114 gaagacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattcttcctccacttgattcaacaagttttgaaatgaagcttgg 50910015  T
Q  194 ttcaagtatga 204  Q
    |||||||||||    
T  50910014 ttcaagtatga 50910004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 38024868 - 38024971
Alignment:
Q  101 tcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagt 200  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||| ||||||  | | |||||||||||    
T  38024868 tcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagt 38024967  T
Q  201 atga 204  Q
    ||||    
T  38024968 atga 38024971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 38031320 - 38031423
Alignment:
Q  101 tcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagt 200  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||| ||||||  | | |||||||||||    
T  38031320 tcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagt 38031419  T
Q  201 atga 204  Q
    ||||    
T  38031420 atga 38031423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 50911863 - 50911965
Alignment:
Q  102 cttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagta 201  Q
    |||| ||||||||||| || |||||||||||||| |||||||||||||| ||||| || ||||||||||| |||| ||||||| | | ||||||||||||    
T  50911863 cttctgtgcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaacaagttttgaaatgaagcttggttcaagta 50911962  T
Q  202 tga 204  Q
    |||    
T  50911963 tga 50911965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 48840702 - 48840806
Alignment:
Q  98 acatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttca 197  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||  ||  ||| |||||| |||||||||||| | | ||||||||    
T  48840702 acatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattctttctccactt-actcaacaagtcttgaaatgaggcttggttca 48840800  T
Q  198 agtatg 203  Q
    ||||||    
T  48840801 agtatg 48840806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 50904792 - 50904885
Alignment:
Q  108 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagta 201  Q
    |||||||||||||||||||||||||||||||||||||||| || || || || ||| ||||||| |||||||||||| | | ||||||||||||    
T  50904792 tgcaaggaatggtgaggccacccattggatgatcatatccgaattcatcctctgctcgactcaacaagtcttgaaatgaagtttggttcaagta 50904885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 38028759 - 38028862
Alignment:
Q  101 tcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagt 200  Q
    ||||| ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || ||||||||||| | || ||||||| | | |||||||||||    
T  38028759 tcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccaaattcttcctcggcttgactcaacaggttttgaaatgaagcttggttcaagt 38028858  T
Q  201 atga 204  Q
    ||||    
T  38028859 atga 38028862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 38044049 - 38043947
Alignment:
Q  102 cttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagta 201  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| || ||||||||||  |||||||||||  | | ||| ||||||||    
T  38044049 cttcggtgcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagta 38043950  T
Q  202 tga 204  Q
    |||    
T  38043949 tga 38043947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 38040074 - 38040177
Alignment:
Q  101 tcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagt 200  Q
    ||||| ||||||||||| |||||||| ||||||||||| |||||||| || ||||| || ||||||||||| | || ||||||| | | |||||||||||    
T  38040074 tcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaggttttgaaatgaagcttggttcaagt 38040173  T
Q  201 atga 204  Q
    ||||    
T  38040174 atga 38040177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 38036792 - 38036888
Alignment:
Q  107 gtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatg 203  Q
    ||||||||||| |||||||| ||||||||||| |||||||| || ||||| || ||||||||||| || | ||||||| | | ||||||||||||||    
T  38036792 gtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaaattttgaaatgaagcttggttcaagtatg 38036888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 38033735 - 38033875
Alignment:
Q  68 ccattcaagcaagaagttatatgttggaagacatcttcagtgcaaggaatggtgaggccacccatt----ggatgatcatatccaaactcttcttcagct 163  Q
    ||||| |||| |||||| |||||   ||| |||||||| ||||| ||||| |||| ||| ||||||    ||||| ||||||||||| ||||| || |||    
T  38033735 ccattgaagcgagaagtaatatgcaagaaaacatcttctgtgcagggaattgtgatgccgcccattaattggatggtcatatccaaattcttcctcggct 38033834  T
Q  164 tgactcaataagtcttgaaataatggttggttcaagtatga 204  Q
    |||||||| |||| ||||||| | | |||||||||||||||    
T  38033835 tgactcaacaagttttgaaatgaagcttggttcaagtatga 38033875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 21607288 - 21607392
Alignment:
Q  100 atcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaag 199  Q
    |||||| ||||||||||  ||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||| ||||||  | | | ||||||||    
T  21607288 atcttctgtgcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagctcggttcaag 21607387  T
Q  200 tatga 204  Q
    |||||    
T  21607388 tatga 21607392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 21634693 - 21634608
Alignment:
Q  98 acatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaa 183  Q
    |||||||| ||||||||||| |||| ||| |||||| |||||||||||||||| ||||| || ||||||||||  |||||||||||    
T  21634693 acatcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaa 21634608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 21604747 - 21604850
Alignment:
Q  101 tcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagt 200  Q
    ||||| ||||||||||| |||||||| ||||||||||| |||||||| || ||||| ||  |||||||||| | || ||||||| | | |||||||||||    
T  21604747 tcttctgtgcaaggaattgtgaggccgcccattggatggtcatatcctaattcttcctcgtcttgactcaacatgttttgaaatgaagcttggttcaagt 21604846  T
Q  201 atga 204  Q
    ||||    
T  21604847 atga 21604850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 3073719 - 3073613
Alignment:
Q  98 acatcttcagtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttca 197  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| ||||| || ||||| || ||  ||||||  |||| ||||||| | | ||||||||    
T  3073719 acatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggttca 3073620  T
Q  198 agtatga 204  Q
    |||||||    
T  3073619 agtatga 3073613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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