View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11490_high_22 (Length: 234)
Name: NF11490_high_22
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11490_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 37173996 - 37173849
Alignment:
| Q |
49 |
aaacagcgtgttggtaagggtggtagttgcacaccataggagaaaggacctcaacatcaatcaaaatcattgcaaagaaaatctttcaaatggtaataat |
148 |
Q |
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| T |
37173996 |
aaacagcgtgttggtaaggggggtagttgcacaccataggagaaaggacctcaacatcaatcaaaatcattgcaaagaaaatctttcaaatggtaataat |
37173897 |
T |
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| Q |
149 |
ttcattgaaatgtttctaatcatgatgaaatacttccctatggtgtga |
196 |
Q |
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| T |
37173896 |
ttcattgaaatgtttctaatcatgatgaaatacttccctatagtgtga |
37173849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 37179095 - 37179059
Alignment:
| Q |
18 |
catcaaacaaatccttttaaaatagatggacaaacag |
54 |
Q |
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| T |
37179095 |
catcaaacaaatccttttaaaatagatggacaaacag |
37179059 |
T |
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