View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11490_high_7 (Length: 391)

Name: NF11490_high_7
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11490_high_7
NF11490_high_7
[»] chr7 (10 HSPs)
chr7 (16-377)||(21930519-21930873)
chr7 (95-248)||(24339604-24339757)
chr7 (102-240)||(13770660-13770792)
chr7 (82-197)||(27944990-27945105)
chr7 (81-263)||(43027404-43027580)
chr7 (83-149)||(24105629-24105694)
chr7 (83-149)||(21864756-21864822)
chr7 (161-248)||(2334278-2334364)
chr7 (102-149)||(11061119-11061166)
chr7 (92-192)||(25481861-25481961)
[»] chr5 (15 HSPs)
chr5 (113-264)||(39698521-39698672)
chr5 (106-240)||(21522723-21522857)
chr5 (106-240)||(21533289-21533423)
chr5 (83-149)||(22013364-22013430)
chr5 (83-192)||(6247572-6247681)
chr5 (83-149)||(19820437-19820503)
chr5 (106-192)||(21191056-21191142)
chr5 (161-240)||(21542058-21542137)
chr5 (220-263)||(131824-131867)
chr5 (106-149)||(15382450-15382493)
chr5 (102-149)||(15410491-15410538)
chr5 (106-149)||(36642805-36642848)
chr5 (116-149)||(14674252-14674285)
chr5 (109-149)||(19552586-19552626)
chr5 (207-263)||(42893423-42893479)
[»] chr6 (20 HSPs)
chr6 (106-240)||(16766670-16766804)
chr6 (82-263)||(8365448-8365629)
chr6 (85-196)||(12696277-12696387)
chr6 (106-248)||(9107314-9107456)
chr6 (83-149)||(3398569-3398635)
chr6 (81-192)||(6898281-6898392)
chr6 (161-240)||(9522919-9522998)
chr6 (107-192)||(7977830-7977915)
chr6 (106-198)||(10770668-10770760)
chr6 (161-262)||(31384948-31385048)
chr6 (106-149)||(426557-426600)
chr6 (82-149)||(853902-853969)
chr6 (106-149)||(7938089-7938132)
chr6 (106-149)||(8777016-8777059)
chr6 (106-149)||(9027151-9027194)
chr6 (108-149)||(9658854-9658895)
chr6 (116-149)||(17841632-17841665)
chr6 (84-149)||(31959111-31959175)
chr6 (83-135)||(2153944-2153996)
chr6 (161-197)||(9911523-9911559)
[»] scaffold0223 (1 HSPs)
scaffold0223 (82-196)||(20121-20235)
[»] chr3 (9 HSPs)
chr3 (120-261)||(4987222-4987363)
chr3 (106-240)||(15796246-15796380)
chr3 (83-263)||(55401025-55401194)
chr3 (84-192)||(8587021-8587129)
chr3 (106-149)||(10335329-10335372)
chr3 (106-149)||(26492248-26492291)
chr3 (91-149)||(24205084-24205142)
chr3 (116-149)||(3865599-3865632)
chr3 (116-149)||(10318077-10318110)
[»] chr8 (14 HSPs)
chr8 (82-149)||(25192390-25192457)
chr8 (106-263)||(22651949-22652106)
chr8 (106-263)||(29510233-29510390)
chr8 (113-263)||(15816058-15816208)
chr8 (82-149)||(41838166-41838233)
chr8 (174-243)||(29655927-29655996)
chr8 (83-149)||(126392-126457)
chr8 (95-149)||(4673468-4673522)
chr8 (83-149)||(13437007-13437073)
chr8 (83-129)||(28642358-28642404)
chr8 (106-192)||(24669406-24669492)
chr8 (209-265)||(4498368-4498424)
chr8 (113-149)||(5813572-5813608)
chr8 (113-149)||(22204619-22204655)
[»] chr1 (17 HSPs)
chr1 (161-263)||(31694639-31694741)
chr1 (83-248)||(5944231-5944398)
chr1 (98-196)||(6612167-6612265)
chr1 (106-263)||(40917724-40917879)
chr1 (23-72)||(43168837-43168885)
chr1 (161-265)||(47989525-47989629)
chr1 (95-149)||(48040505-48040559)
chr1 (210-266)||(22515824-22515880)
chr1 (106-149)||(398808-398851)
chr1 (116-192)||(46348383-46348459)
chr1 (106-149)||(48450630-48450673)
chr1 (83-149)||(5927383-5927449)
chr1 (102-147)||(16297328-16297373)
chr1 (210-263)||(18471361-18471414)
chr1 (116-149)||(18556499-18556532)
chr1 (214-263)||(21365992-21366041)
chr1 (210-263)||(51410091-51410144)
[»] scaffold0003 (1 HSPs)
scaffold0003 (106-263)||(241567-241724)
[»] chr2 (18 HSPs)
chr2 (161-263)||(35056896-35056998)
chr2 (98-240)||(36756296-36756438)
chr2 (82-194)||(20539672-20539784)
chr2 (83-149)||(19536441-19536507)
chr2 (106-261)||(15657837-15657992)
chr2 (83-188)||(6940205-6940310)
chr2 (84-192)||(21624217-21624326)
chr2 (161-263)||(12668352-12668454)
chr2 (81-149)||(21091672-21091739)
chr2 (83-185)||(21374706-21374809)
chr2 (163-263)||(37419773-37419873)
chr2 (116-192)||(37558960-37559036)
chr2 (213-263)||(29176368-29176418)
chr2 (116-149)||(24894372-24894405)
chr2 (161-254)||(28524454-28524547)
chr2 (106-191)||(18841014-18841099)
chr2 (83-147)||(33519736-33519800)
chr2 (219-263)||(44635568-44635612)
[»] chr4 (15 HSPs)
chr4 (82-149)||(11651177-11651244)
chr4 (87-149)||(28084475-28084537)
chr4 (183-248)||(15724498-15724563)
chr4 (106-192)||(23292986-23293072)
chr4 (164-244)||(19312366-19312446)
chr4 (107-195)||(16303263-16303351)
chr4 (217-263)||(12047339-12047385)
chr4 (116-194)||(30298929-30299008)
chr4 (116-194)||(30327797-30327876)
chr4 (83-149)||(40481588-40481653)
chr4 (108-149)||(20633460-20633501)
chr4 (161-246)||(27706123-27706208)
chr4 (161-261)||(28000672-28000773)
chr4 (210-266)||(28964185-28964241)
chr4 (210-246)||(34306761-34306797)
[»] scaffold0053 (1 HSPs)
scaffold0053 (106-263)||(8771-8917)
[»] scaffold0306 (1 HSPs)
scaffold0306 (83-149)||(13350-13416)
[»] scaffold0152 (1 HSPs)
scaffold0152 (83-149)||(21911-21977)
[»] scaffold0136 (1 HSPs)
scaffold0136 (161-263)||(3778-3880)
[»] scaffold0007 (1 HSPs)
scaffold0007 (91-149)||(225311-225369)
[»] scaffold0027 (1 HSPs)
scaffold0027 (102-192)||(46651-46741)
[»] scaffold0171 (1 HSPs)
scaffold0171 (83-196)||(23371-23483)
[»] scaffold0018 (2 HSPs)
scaffold0018 (106-149)||(178862-178905)
scaffold0018 (108-149)||(192292-192333)
[»] scaffold0004 (1 HSPs)
scaffold0004 (113-185)||(92787-92859)
[»] scaffold0246 (1 HSPs)
scaffold0246 (83-149)||(19527-19592)
[»] scaffold0103 (1 HSPs)
scaffold0103 (116-149)||(51794-51827)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 377
Target Start/End: Original strand, 21930519 - 21930873
Alignment:
Q  16 aaagagagagatgaatcaagataactgattgtggttgtatgagttatcatgaccttattattaagtcctatgaagcacagatacgaacatcggacacgat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    ||||   |||| ||    
T  21930519 aaagagagagatgaatcaagataactgattgtggttgtatgagttatcatgaccttattattaagtcctatgaatcacagat----acat---acacaat 21930611  T
Q  116 acggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgt 215  Q
    | ||||||||||||||||||||||||||||||||       |||||||||||| | | ||||| ||||||| ||||||||||||| |||| |||| ||||    
T  21930612 atggacactgacacgccgactcagctaataattt-aaaaaattagataattcattttaattacaagtgtcgatgtcgtgtcagtgttggacacaagacgt 21930710  T
Q  216 atccgacaccgaaacacgcctaatctgaggagtatccatacttcatagttattaatg-nnnnnnnnnnnnnctaaacagaatgaatcagatactacacnn 314  Q
     |||||| ||| ||||| ||||||| || |||  ||||| |||||||||||||||||              ||||||||||||||||||||||| |||      
T  21930711 gtccgacgccggaacacacctaatccgaagagagtccatgcttcatagttattaatgttttttttctttttctaaacagaatgaatcagatactgcactt 21930810  T
Q  315 nnnnnctgttcacttagttaagctgcaccactaattgttgtgacagattgtacctgttttcat 377  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21930811 tttttctgttcacttagttaagctgcaccactaattgttgtgacagattgtacctgttttcat 21930873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 95 - 248
Target Start/End: Original strand, 24339604 - 24339757
Alignment:
Q  95 gatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtg 194  Q
    |||||| ||| ||||||||| | ||||| |||||||||||| |||||||||||||       | | |||||||||||| ||||| |||||||||||||||    
T  24339604 gatacggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtg 24339703  T
Q  195 tcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagt 248  Q
    || |||  ||| || |||||||||||||||||  |||||||||||| |||||||    
T  24339704 tcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagt 24339757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 240
Target Start/End: Original strand, 13770660 - 13770792
Alignment:
Q  102 acatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtga 201  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||||||       ||| |||||||||||| ||||| ||||||| |||||||||         
T  13770660 acatcggacacgacacggacactgatacgccgacacagctaataatttaaaaaaattacataattcagtgtaattacaagtgtcgttgtcgtgtc----- 13770754  T
Q  202 tggatacaacacgtatccgacaccgaaacacgcctaatc 240  Q
     ||| ||||||||| |||||||||| |||||||||||||    
T  13770755 -ggacacaacacgtgtccgacaccggaacacgcctaatc 13770792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 27944990 - 27945105
Alignment:
Q  82 cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccag 181  Q
    |||||||||||| |||||| ||| ||||||||| |||||||||||||||||||| |  ||||||||||       ||| |||||||||||| ||||| ||    
T  27944990 cctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaattacaag 27945089  T
Q  182 tgtcggtgtcgtgtca 197  Q
    ||||||||||||||||    
T  27945090 tgtcggtgtcgtgtca 27945105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 263
Target Start/End: Complemental strand, 43027580 - 43027404
Alignment:
Q  81 tcctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattacca 180  Q
    ||||||||||||| ||| || |||  |||||||| ||||||||||||||| |||| |||||||||||||       | | ||||| |||||| | ||| |    
T  43027580 tcctatgaagcacggatgcggacactggacacgacacggacactgacacggcgacccagctaataatttgaaaaaatcacataatgcagtgtaaatacaa 43027481  T
Q  181 gtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
    |||||||||||||||||      || || |||||| ||||||||||  |||||||||||| || |||| ||| | ||||||||    
T  43027480 gtgtcggtgtcgtgtca------gacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 24105629 - 24105694
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||||| |||||| | | ||||||||| |||||||||||||||||||| |||||||||||||    
T  24105629 ctatgaagcacggatacggata-cggacacgacacggacactgacacgccgacacagctaataattt 24105694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 21864756 - 21864822
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||||| |||||  ||||||||||||| |||||||| ||||| | ||| |||||||||||||    
T  21864756 ctatgaagcacggatacacacatcggacacgacacggacacggacacacggacacagctaataattt 21864822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 2334278 - 2334364
Alignment:
Q  161 ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagt 248  Q
    |||||| ||||| ||||| ||||||||||||||||| |||  ||| || |||| | |||||||| |||||||| |||||| |||||||    
T  2334278 ataatttagtgtaattacaagtgtcggtgtcgtgtc-gtgtcggacacgacacatgtccgacactgaaacacgtctaatccgaggagt 2334364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 11061166 - 11061119
Alignment:
Q  102 acatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    |||||||| |||| |||||||||||||| ||||| |||||||||||||    
T  11061166 acatcggatacgacacggacactgacacaccgacacagctaataattt 11061119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 25481861 - 25481961
Alignment:
Q  92 acagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtc 191  Q
    ||||| ||| ||||||||||| | | ||||| |||||||||||| |||||||||||||       | | |||||||||||| ||||| ||||| ||||||    
T  25481861 acagacacggacatcggacacaacatggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgtc 25481960  T
Q  192 g 192  Q
    |    
T  25481961 g 25481961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 113 - 264
Target Start/End: Original strand, 39698521 - 39698672
Alignment:
Q  113 gatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaaca 212  Q
    ||||||||||||||||||| ||| |||||||||||||       | | |||||||||||| ||||| |||||| |||||||||| |||  ||| || |||    
T  39698521 gatacggacactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgaca 39698620  T
Q  213 cgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatagt 264  Q
     |||||||||||||| |||||||||||| ||||||| ||| | |||||||||    
T  39698621 tgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatagt 39698672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 21522723 - 21522857
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga 205  Q
    ||||||||| |||||||||||||||||||| |||||||||||||       | | |||||||||||| ||||| | ||||||||||||||| |||  |||    
T  21522723 cggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcgga 21522822  T
Q  206 tacaacacgtatccgacaccgaaacacgcctaatc 240  Q
     || |||||| |||| |||||  ||||||||||||    
T  21522823 cacgacacgtgtccggcaccgggacacgcctaatc 21522857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 21533289 - 21533423
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga 205  Q
    ||||||||| |||||||||||||||||||| |||||||||||||       | | |||||||||||| ||||| | ||||||||||||||| |||  |||    
T  21533289 cggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcgga 21533388  T
Q  206 tacaacacgtatccgacaccgaaacacgcctaatc 240  Q
     || |||||| |||| |||||  ||||||||||||    
T  21533389 cacgacacgtgtccggcaccgggacacgcctaatc 21533423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 22013364 - 22013430
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||||| |||||| ||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  22013364 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataattt 22013430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 6247572 - 6247681
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagt 182  Q
    ||||||| ||| ||| || ||| ||||||||||||| |||||||||||||||| || ||||||||||       | | |||||||||||| ||||| |||    
T  6247572 ctatgaaacacggatgcggacaccggacacgatacgcacactgacacgccgacacatctaataatttgaaaaaatcacataattcagtgtaattacaagt 6247671  T
Q  183 gtcggtgtcg 192  Q
    ||||||||||    
T  6247672 gtcggtgtcg 6247681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 19820503 - 19820437
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||||| |||||| ||| ||||||||| |||||||||||||| ||||| | |||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataattt 19820437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 21191142 - 21191056
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcg 192  Q
    ||||||||| ||||||||||||| |||||| |||||||||||||       | | |||||||||||| ||||| |||||||||||||    
T  21191142 cggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 21191056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 21542058 - 21542137
Alignment:
Q  161 ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatc 240  Q
    |||||||||||| ||||| ||||||||||||||||| |||  ||| || |||||| ||||||||||  ||||||| ||||    
T  21542058 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacaccgggacacgccgaatc 21542137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 131824 - 131867
Alignment:
Q  220 gacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||    
T  131824 gacaccgaaacatgcctaatctaaggagtgtccatacttcatag 131867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 15382450 - 15382493
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||    
T  15382450 cggacacgacacggacaatgacacgccgacacagctaataattt 15382493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 15410538 - 15410491
Alignment:
Q  102 acatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||| ||||||| |||||||||||||||||||| | |||||||||||    
T  15410538 acatcagacacgacacggacactgacacgccgacaccgctaataattt 15410491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 36642848 - 36642805
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||    
T  36642848 cggacacgacacggacactgacacgccgacacagttaataattt 36642805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 14674252 - 14674285
Alignment:
Q  116 acggacactgacacgccgactcagctaataattt 149  Q
    |||||||||||||||||||| |||||||||||||    
T  14674252 acggacactgacacgccgacacagctaataattt 14674285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 19552626 - 19552586
Alignment:
Q  109 acacgatacggacactgacacgccgactcagctaataattt 149  Q
    |||||| |||||||||||||||||||| ||| |||||||||    
T  19552626 acacgacacggacactgacacgccgacacagttaataattt 19552586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 42893423 - 42893479
Alignment:
Q  207 acaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
    ||||||||| |||||||||   ||||||||||| |||||||| ||||| ||||||||    
T  42893423 acaacacgtgtccgacaccaggacacgcctaatatgaggagtgtccatgcttcatag 42893479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 16766670 - 16766804
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga 205  Q
    ||||||||| | |||||||||||||||||| |||||||||||||       | | |||||||||||| ||||| ||||||||||||||||| |||  |||    
T  16766670 cggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcgga 16766769  T
Q  206 tacaacacgtatccgacaccgaaacacgcctaatc 240  Q
     ||||||||| ||||||||||  ||||||||||||    
T  16766770 cacaacacgtgtccgacaccgggacacgcctaatc 16766804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 263
Target Start/End: Complemental strand, 8365629 - 8365448
Alignment:
Q  82 cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccag 181  Q
    |||||||||||| |||||| ||| | ||||||| |||||||||||||||||||| || ||||||||||       | | ||||||| |||| ||||| ||    
T  8365629 cctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaattacaag 8365530  T
Q  182 tgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
    ||||||||||||||| ||   ||| || |||||| |||||||| |  |||||||||||| ||||||| ||| | ||||||||    
T  8365529 tgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcatag 8365448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 12696277 - 12696387
Alignment:
Q  85 atgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgt 184  Q
    ||||||||| |||||| ||| ||||||||| |||||||||||||||||||| |||||||||||||       ||| |||||||||||| ||||| |||||    
T  12696277 atgaagcacggatacggaca-cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgt 12696375  T
Q  185 cggtgtcgtgtc 196  Q
    | ||||||||||    
T  12696376 cagtgtcgtgtc 12696387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 248
Target Start/End: Complemental strand, 9107456 - 9107314
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga 205  Q
    ||||||||| ||||||||| |||||||||| |||||||||||||       | | | |||||||||| ||||| ||||||||||||||||| |||  |||    
T  9107456 cggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcgga 9107357  T
Q  206 tacaacacgtatccgacaccgaaacacgcctaatctgaggagt 248  Q
     |||||  || ||||||||||  |||| ||||||| |||||||    
T  9107356 cacaacgtgtgtccgacaccgggacacacctaatccgaggagt 9107314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 3398569 - 3398635
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||||  |||||| |||||| |||||| |||||||||||||||||||| |||||||||||||    
T  3398569 ctatgaagcatggatacggacatcgaacacgacacggacactgacacgccgacacagctaataattt 3398635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 6898392 - 6898281
Alignment:
Q  81 tcctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattacca 180  Q
    |||||||||||||| | ||||||| ||||||||||| |||||||||||||| ||| |  ||||||||||       ||| |||||| ||||| ||||| |    
T  6898392 tcctatgaagcacaaacacgaacaacggacacgatatggacactgacacgctgacacgtctaataatttgaacaaattacataattaagtgtaattacaa 6898293  T
Q  181 gtgtcggtgtcg 192  Q
    ||||||||||||    
T  6898292 gtgtcggtgtcg 6898281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 9522919 - 9522998
Alignment:
Q  161 ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatc 240  Q
    |||||||||||| ||||| ||||||||||| ||||| |||  |||| | |||||| ||||||||||| ||||||||||||    
T  9522919 ataattcagtgtaattacaagtgtcggtgttgtgtcggtgtcggatccgacacgtgtccgacaccgagacacgcctaatc 9522998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 7977915 - 7977830
Alignment:
Q  107 ggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcg 192  Q
    |||||||| | ||| |||||||||||||| |||||||||||||       ||| |||||||||||| ||||| |||||||||||||    
T  7977915 ggacacgacatggatactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcg 7977830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 10770760 - 10770668
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcag 198  Q
    ||||||||| | ||||||||||||||| || || ||||||||||       | | |||||||||||| ||||| |||||||||||||||||||    
T  10770760 cggacacgacatggacactgacacgccaacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcag 10770668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 262
Target Start/End: Original strand, 31384948 - 31385048
Alignment:
Q  161 ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttca 260  Q
    |||||||||||| ||||| |||||| ||||||||| |||| |||| || |||||| ||| ||||||  ||||||||||||  |||||| ||| | |||||    
T  31384948 ataattcagtgtaattacaagtgtcagtgtcgtgt-agtgttggacacgacacgtgtcctacaccgggacacgcctaatccaaggagtgtccgtgcttca 31385046  T
Q  261 ta 262  Q
    ||    
T  31385047 ta 31385048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 426600 - 426557
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||    
T  426600 cggacacgacacggacactgacacgccgacacagttaataattt 426557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 853969 - 853902
Alignment:
Q  82 cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    |||||||| ||| |||||| ||| ||||||||| |||||  ||||||||||||| || ||||||||||    
T  853969 cctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataattt 853902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 7938089 - 7938132
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||| | |||||||||||||||||| |||||||||||||    
T  7938089 cggacacgacatggacactgacacgccgacacagctaataattt 7938132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 8777059 - 8777016
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||| |||||||||||||||||||| || ||||||||||    
T  8777059 cggacacgacacggacactgacacgccgacacaactaataattt 8777016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 9027151 - 9027194
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||| |||||||||||||||||||| | |||||||||||    
T  9027151 cggacacgacacggacactgacacgccgacaccgctaataattt 9027194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 9658854 - 9658895
Alignment:
Q  108 gacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||| |||||||||||||||||||| | |||||||||||    
T  9658854 gacacgacacggacactgacacgccgacaccgctaataattt 9658895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 17841665 - 17841632
Alignment:
Q  116 acggacactgacacgccgactcagctaataattt 149  Q
    |||||||||||||||||||| |||||||||||||    
T  17841665 acggacactgacacgccgacacagctaataattt 17841632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 31959111 - 31959175
Alignment:
Q  84 tatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    |||||||||| |||||| ||| |||||| || ||| |||||||||||||| | |||||||||||||    
T  31959111 tatgaagcacggatacggaca-cggacatgacacgaacactgacacgccgtcacagctaataattt 31959175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 2153996 - 2153944
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgac 135  Q
    |||||||||||| | ||| |||||||||| || |||||||| |||||||||||    
T  2153996 ctatgaagcacaaacacggacatcggacatgacacggacaccgacacgccgac 2153944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 9911559 - 9911523
Alignment:
Q  161 ataattcagtgtgattaccagtgtcggtgtcgtgtca 197  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  9911559 ataattcagtgtaattacaagtgtcggtgtcgtgtca 9911523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 82 - 196
Target Start/End: Original strand, 20121 - 20235
Alignment:
Q  82 cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccag 181  Q
    ||||||||||||||||||| ||| ||||||||| ||||||| |||||||||||| |||||||||||||       | | |||||||||||| ||||| ||    
T  20121 cctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaag 20220  T
Q  182 tgtcggtgtcgtgtc 196  Q
    |||| ||||||||||    
T  20221 tgtcagtgtcgtgtc 20235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 261
Target Start/End: Complemental strand, 4987363 - 4987222
Alignment:
Q  120 acactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatcc 219  Q
    |||||||||||||||| |||||||||||||       | | |||||||||||| ||||| ||||| |||| |||||| ||| |||| || |||||| |||    
T  4987363 acactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgacgtgtcggtgttggacacgacacgtgtcc 4987264  T
Q  220 gacaccgaaacacgcctaatctgaggagtatccatacttcat 261  Q
    |||||||  |||||||||||| ||||||| ||| ||||||||    
T  4987263 gacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 15796380 - 15796246
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga 205  Q
    ||||||||| ||||||| |||||||||||| ||| |||||||||       | | |||||||||||| ||||| | ||||||||||||||  |||  |||    
T  15796380 cggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcatataattcagtgtaattacaattgtcggtgtcgtgtaggtgtcgga 15796281  T
Q  206 tacaacacgtatccgacaccgaaacacgcctaatc 240  Q
     ||||||||| ||| |||||| |||||||||||||    
T  15796280 cacaacacgtgtccaacaccggaacacgcctaatc 15796246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 263
Target Start/End: Original strand, 55401025 - 55401194
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagt 182  Q
    |||||||||||||||||| ||| |||| |||| ||||||||||| |||||||| || ||||||||||       | | |||||| ||||| ||||| |||    
T  55401025 ctatgaagcacagatacggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagt 55401124  T
Q  183 gtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
    |||||||||           ||| || |||||| ||||||||||| |||||||||||| ||||||| ||| | ||||||||    
T  55401125 gtcggtgtc-----------ggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 8587129 - 8587021
Alignment:
Q  84 tatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtg 183  Q
    ||||||||||||||||| ||| |||||| || |||||||||||||||||||| || ||| ||||||       | | |||||| ||||| ||||| ||||    
T  8587129 tatgaagcacagatacggacaccggacatgacacggacactgacacgccgacacatctagtaatttgaaaaaatcacataattaagtgtaattacaagtg 8587030  T
Q  184 tcggtgtcg 192  Q
    |||||||||    
T  8587029 tcggtgtcg 8587021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 10335372 - 10335329
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||| |||||||||||||||||||| || ||||||||||    
T  10335372 cggacacgacacggacactgacacgccgacacaactaataattt 10335329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 26492291 - 26492248
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||    
T  26492291 cggacacgacacggacactgacacgccgacagagctaataattt 26492248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 24205142 - 24205084
Alignment:
Q  91 cacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    |||||| ||| ||| ||||||||| |||||||||||||||||||| | | |||||||||    
T  24205142 cacagacacggacaccggacacgacacggacactgacacgccgacacggataataattt 24205084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 3865632 - 3865599
Alignment:
Q  116 acggacactgacacgccgactcagctaataattt 149  Q
    |||||||||||||||||||| |||||||||||||    
T  3865632 acggacactgacacgccgacacagctaataattt 3865599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 10318110 - 10318077
Alignment:
Q  116 acggacactgacacgccgactcagctaataattt 149  Q
    |||||||||||||||||||| |||||||||||||    
T  10318110 acggacactgacacgccgacacagctaataattt 10318077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 25192457 - 25192390
Alignment:
Q  82 cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  25192457 cctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataattt 25192390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 263
Target Start/End: Original strand, 22651949 - 22652106
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga 205  Q
    ||||||||| |||||||||||||||||||| |||||||||||||       | | |||||||| | | ||||| ||||||||||||||||| |||  |||    
T  22651949 cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtcgga 22652048  T
Q  206 tacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
     || ||| || ||||||||||  ||||| |||||| ||||||| ||| | ||||||||    
T  22652049 cacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 106 - 263
Target Start/End: Complemental strand, 29510390 - 29510233
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga 205  Q
    ||||||||| |||||||||||||||||||| |||||||||||||       | | | |||||||| | ||||| ||||||||||| ||||| |||  |||    
T  29510390 cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacaaaattcagtataattacaagtgtcggtgtagtgtcggtgtcgga 29510291  T
Q  206 tacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
     || || ||| ||||||||||  |||| ||||||| ||||||| ||| | ||||||||    
T  29510290 cacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 29510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 263
Target Start/End: Complemental strand, 15816208 - 15816058
Alignment:
Q  113 gatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaaca 212  Q
    ||||||||||||||||||||||| || ||||||||||       | | |||||| ||||| ||||  ||||||||||||||||  |||  ||| || |||    
T  15816208 gatacggacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggacacgaca 15816109  T
Q  213 cgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
    || |||||||||||  |||||||||||| ||| ||| ||| | ||||||||    
T  15816108 cgaatccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 15816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 41838233 - 41838166
Alignment:
Q  82 cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    |||| ||||||| |||||| ||||  ||||||||||||||||||||||| |||| |||||||||||||    
T  41838233 cctaagaagcacggatacggacataagacacgatacggacactgacacgtcgacacagctaataattt 41838166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 29655996 - 29655927
Alignment:
Q  174 attaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctga 243  Q
    ||||| ||||| || ||||||||||||  ||| ||||||| |||| ||||||||||||||||||||||||    
T  29655996 attacaagtgtaggcgtcgtgtcagtgtcggacacaacacatatctgacaccgaaacacgcctaatctga 29655927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 126457 - 126392
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||||| |||||| ||| ||||||||||||||| ||||||||||| || | |||||||||||    
T  126457 ctatgaagcacggatacgcaca-cggacacgatacggatactgacacgccaacaccgctaataattt 126392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 4673522 - 4673468
Alignment:
Q  95 gatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    |||||| ||||||||||||| || ||||||||||||||||| ||| |||||||||    
T  4673522 gatacggacatcggacacgacacagacactgacacgccgacacagataataattt 4673468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 13437073 - 13437007
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||||| || | | ||| |||||| || | |||||||||||||||||| |||||||||||||    
T  13437073 ctatgaagcacggacatggacaccggacatgacatggacactgacacgccgacacagctaataattt 13437007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 28642358 - 28642404
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacac 129  Q
    ||||||||||| |||||| ||||||||||||| ||||||| ||||||    
T  28642358 ctatgaagcacggatacggacatcggacacgacacggacaatgacac 28642404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 24669406 - 24669492
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcg 192  Q
    ||||||||| || ||||||||||||| ||| | | |||||||||       ||| |||||||||||| ||||| |||||||||||||    
T  24669406 cggacacgacacagacactgacacgctgacaccgttaataatttgaggaaattacataattcagtgtaattacaagtgtcggtgtcg 24669492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 4498368 - 4498424
Alignment:
Q  209 aacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatagtt 265  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||| | |||| |||||    
T  4498368 aacatgtatccgacaccgaaacacacctaatcagaggagtgtccgtgcttcttagtt 4498424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 5813572 - 5813608
Alignment:
Q  113 gatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  5813572 gatacggacacggacacgccgacacagctaataattt 5813608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 22204619 - 22204655
Alignment:
Q  113 gatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||||||||||||||||| || ||||||||||    
T  22204619 gatacggacactgacacgccgacacaactaataattt 22204655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 31694741 - 31694639
Alignment:
Q  161 ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttca 260  Q
    |||||||||| | ||||| ||||||||||||||||| |||  ||| ||||||| ||| |||||||| ||||||||||||||||||||| ||| | |||||    
T  31694741 ataattcagtataattacaagtgtcggtgtcgtgtcggtgtcggacacaacacatattcgacaccggaacacgcctaatctgaggagtgtccgtgcttca 31694642  T
Q  261 tag 263  Q
    |||    
T  31694641 tag 31694639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 248
Target Start/End: Original strand, 5944231 - 5944398
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnn--ttagataattcagtgtgattacca 180  Q
    ||||||| |||||| | | ||||||||||||| || ||||||||||||||| | |||||||||||||         | | |||||||||||| ||||  |    
T  5944231 ctatgaaacacagacaaggacatcggacacgacacagacactgacacgccgccacagctaataatttgaaaaaaaatcacataattcagtgtaattataa 5944330  T
Q  181 gtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagt 248  Q
    ||||||||||||||||  ||| ||| ||||||| | ||||||||||  | |||||||||| |||||||    
T  5944331 gtgtcggtgtcgtgtcgatgacggacacaacacatgtccgacaccgggatacgcctaatccgaggagt 5944398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 6612265 - 6612167
Alignment:
Q  98 acgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtc 196  Q
    ||||||| ||||||||| ||||||| |||||||||||  ||| |||||||||       ||| |||||||||||| ||||| |||||||||||||||||    
T  6612265 acgaacaccggacacgacacggacaatgacacgccgatacagttaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtc 6612167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 106 - 263
Target Start/End: Original strand, 40917724 - 40917879
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga 205  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||       | | |  ||| ||||| ||||| ||| ||||||||||||| ||| ||||    
T  40917724 cggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatcaca--attaagtgtaattacaagtctcggtgtcgtgtcggtgttgga 40917821  T
Q  206 tacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
     || |||||| ||||||||||  |||||||||||| ||||| | ||| | ||||||||    
T  40917822 cacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcatag 40917879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 43168885 - 43168837
Alignment:
Q  23 gagatgaatcaagataactgattgtggttgtatgagttatcatgacctta 72  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  43168885 gagatgaatcaagata-ctgattgtggttgtatgagttatcattacctta 43168837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 47989525 - 47989629
Alignment:
Q  161 ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttca 260  Q
    |||||||||||| ||||| ||||||||||||||||| |||  ||| || |||| | || |||| ||  |||||||||||| ||||||| ||| | |||||    
T  47989525 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttca 47989624  T
Q  261 tagtt 265  Q
    |||||    
T  47989625 tagtt 47989629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 48040559 - 48040505
Alignment:
Q  95 gatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    |||||| ||| ||||||||| |||||||||||||||||||| ||| |||||||||    
T  48040559 gatacggacaccggacacgacacggacactgacacgccgacacagataataattt 48040505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 22515880 - 22515824
Alignment:
Q  210 acacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatagtta 266  Q
    |||| ||||||||||||| |||||||||||| ||||||| ||| | |||||||||||    
T  22515880 acacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatagtta 22515824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 398851 - 398808
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||| |||||||||||||||||||| | |||||||||||    
T  398851 cggacacgacacggacactgacacgccgacaccgctaataattt 398808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 46348459 - 46348383
Alignment:
Q  116 acggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcg 192  Q
    |||||||||||||||||||| |||||||||||||       | | |||||| ||||| ||||| |||||||||||||    
T  46348459 acggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcg 46348383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 48450673 - 48450630
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||| ||||||||||||||||| || |||||||||||||    
T  48450673 cggacacgacacggacactgacacgccaacacagctaataattt 48450630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 5927449 - 5927383
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    |||| |||||| |||||| ||| ||||||||| ||||||||||||||||  || | |||||||||||    
T  5927449 ctattaagcacggatacggacaccggacacgacacggacactgacacgctaacactgctaataattt 5927383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 16297373 - 16297328
Alignment:
Q  102 acatcggacacgatacggacactgacacgccgactcagctaataat 147  Q
    ||||||||||||||||||| ||||||||| |||| |||| ||||||    
T  16297373 acatcggacacgatacggatactgacacgtcgacacagcaaataat 16297328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 18471361 - 18471414
Alignment:
Q  210 acacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
    |||||| |||||||||||||||| ||||||  ||||||| ||| ||||||||||    
T  18471361 acacgtgtccgacaccgaaacacacctaattcgaggagtgtccgtacttcatag 18471414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 18556532 - 18556499
Alignment:
Q  116 acggacactgacacgccgactcagctaataattt 149  Q
    |||||||||||||||||||| |||||||||||||    
T  18556532 acggacactgacacgccgacacagctaataattt 18556499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 21366041 - 21365992
Alignment:
Q  214 gtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
    |||||||||||||| |||||||||||| ||||||| ||| | ||||||||    
T  21366041 gtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 21365992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 51410091 - 51410144
Alignment:
Q  210 acacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
    |||||||||||||||||| ||||||||||||  |||||||| | | ||||||||    
T  51410091 acacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcatag 51410144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 106 - 263
Target Start/End: Original strand, 241567 - 241724
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga 205  Q
    ||||||||| |||||||||||||||||||| |||||||||||||       | | |||||| ||||| ||||  ||||||||||||||||  |||  |||    
T  241567 cggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcacataatttagtgtaattatgagtgtcggtgtcgtgttggtgtcgga 241666  T
Q  206 tacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
     || |||||| ||||||||||  |||||||||||| ||| ||| ||| | ||||||||    
T  241667 cacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 35056896 - 35056998
Alignment:
Q  161 ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttca 260  Q
    |||||||||||| ||||   |||||||||||||||| |||  ||| || |||||| |||||||| ||||||||||||||||||||||| ||| | |||||    
T  35056896 ataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttca 35056995  T
Q  261 tag 263  Q
    |||    
T  35056996 tag 35056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 240
Target Start/End: Complemental strand, 36756438 - 36756296
Alignment:
Q  98 acgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtca 197  Q
    |||||||||||| |||| || |||||||||||| |||| || ||||||||||       | | |||||||||||| ||||  |||||||||||||||| |    
T  36756438 acgaacatcggatacgacacagacactgacacgtcgacacaactaataatttgaagaaataacataattcagtgtaattataagtgtcggtgtcgtgtta 36756339  T
Q  198 gtgatggatacaacacgtatccgacaccgaaacacgcctaatc 240  Q
    |||  | | ||||||| | |||||||||| |||||||||||||    
T  36756338 gtgtcgaacacaacacatgtccgacaccgcaacacgcctaatc 36756296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 20539784 - 20539672
Alignment:
Q  82 cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccag 181  Q
    |||||||||||| |||||| |||  |||||||| ||||||||||||||| |||| |||||||||||||       | | |||||| ||||| ||||| ||    
T  20539784 cctatgaagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaatcatataatttagtgtaattacaag 20539685  T
Q  182 tgtcggtgtcgtg 194  Q
    |||||||||||||    
T  20539684 tgtcggtgtcgtg 20539672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 19536507 - 19536441
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    |||||||||||||||||| ||| ||||||||| ||||||| |||||||||||| || ||||||||||    
T  19536507 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacaactaataattt 19536441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 261
Target Start/End: Original strand, 15657837 - 15657992
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga 205  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||       | | |||||||||||| ||||| | ||||||||||||||   ||  |||    
T  15657837 cggacacgacacggacactaacacgccgactcaactaataatttgtaaaaatcacataattcagtgtaattacaaatgtcggtgtcgtgttgatgtcgga 15657936  T
Q  206 tacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcat 261  Q
      | |||||| |||||| |||  ||||||||| || ||||||| ||||| ||||||    
T  15657937 cgcgacacgtgtccgacgccgggacacgcctagtccgaggagtgtccatgcttcat 15657992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 6940205 - 6940310
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagt 182  Q
    ||||||| ||| |||||| |||||  | |||| |||||||||||||||||||| |||||||||||||       ||| |||||| ||||| ||||| |||    
T  6940205 ctatgaaacacggatacggacatcaaatacgacacggacactgacacgccgacacagctaataattttaaaaagttacataattaagtgtaattacaagt 6940304  T
Q  183 gtcggt 188  Q
    ||||||    
T  6940305 gtcggt 6940310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 21624217 - 21624326
Alignment:
Q  84 tatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttag-ataattcagtgtgattaccagt 182  Q
    |||||||| | |||||| ||| || |||||| || ||||||||||||||||| |||||||||||||        ||| |||||||||||| ||||| |||    
T  21624217 tatgaagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataattttaaaaaaatagcataattcagtgtaattacaagt 21624316  T
Q  183 gtcggtgtcg 192  Q
    ||||||||||    
T  21624317 gtcggtgtcg 21624326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 12668454 - 12668352
Alignment:
Q  161 ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttca 260  Q
    |||||||||||| ||||  ||||||||||||||||| ||  ||||||| ||||||||| ||||  |  |||| ||||||  ||||||||||| | |||||    
T  12668454 ataattcagtgtaattataagtgtcggtgtcgtgtcggtattggatacgacacgtatctgacattgggacacacctaattcgaggagtatccgtgcttca 12668355  T
Q  261 tag 263  Q
    |||    
T  12668354 tag 12668352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 21091672 - 21091739
Alignment:
Q  81 tcctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||||||| ||||| |||| ||||||| | |||||||||||||| ||||| | |||||||||||    
T  21091672 tcctatgaagcacggatacaaaca-cggacacaagacggacactgacacaccgacaccgctaataattt 21091739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 21374809 - 21374706
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacac--gatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattacca 180  Q
    ||||||||||| |||||| ||| |||||||  || ||||||||| |||||||||| |||||||||||||       ||| |||||||||||| ||||| |    
T  21374809 ctatgaagcacggatacggaca-cggacaccggacacggacactaacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaa 21374711  T
Q  181 gtgtc 185  Q
    |||||    
T  21374710 gtgtc 21374706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 37419773 - 37419873
Alignment:
Q  163 aattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcata 262  Q
    |||||||||| ||||| |||| |||||||||||| |||  ||| || |  ||| ||||||||||  |||||||||||| ||||||| ||| | |||||||    
T  37419773 aattcagtgtaattacaagtgccggtgtcgtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 37419872  T
Q  263 g 263  Q
    |    
T  37419873 g 37419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 37558960 - 37559036
Alignment:
Q  116 acggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcg 192  Q
    |||||||||||||||||||| |||||||||||||       | | |||||||| ||| ||||| |||||||||||||    
T  37558960 acggacactgacacgccgacacagctaataatttgtaaaaatcacataattcaatgtaattacaagtgtcggtgtcg 37559036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 29176418 - 29176368
Alignment:
Q  213 cgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
    |||||||||||||||||||||||||||| ||| ||| | ||| ||||||||    
T  29176418 cgtatccgacaccgaaacacgcctaatccgagaagtgttcatgcttcatag 29176368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 24894372 - 24894405
Alignment:
Q  116 acggacactgacacgccgactcagctaataattt 149  Q
    |||||||||||||||||||| |||||||||||||    
T  24894372 acggacactgacacgccgacacagctaataattt 24894405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 28524454 - 28524547
Alignment:
Q  161 ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccat 254  Q
    |||||||||||| ||||   |||||| ||| ||||  |||  ||| ||||||||| || ||||| ||||||||||||||||||| ||| |||||    
T  28524454 ataattcagtgtaattatatgtgtcgttgttgtgttggtgtcggacacaacacgtgtctgacacagaaacacgcctaatctgagaagtgtccat 28524547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 18841099 - 18841014
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtc 191  Q
    ||||||||| | |||||||||||||| ||| || ||||||||||       ||| |||||| ||||| ||||| ||||||||||||    
T  18841099 cggacacgacatggacactgacacgctgacacaactaataatttgaaaaaattacataattaagtgtaattacaagtgtcggtgtc 18841014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 33519736 - 33519800
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataat 147  Q
    ||||||||||| |||||| ||| |||||||||  |||| |||||||| ||||| | |||||||||    
T  33519736 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 33519800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 44635568 - 44635612
Alignment:
Q  219 cgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
    ||||||||| |||||||||||||||||||| ||| | ||||||||    
T  44635568 cgacaccgagacacgcctaatctgaggagtgtccgtgcttcatag 44635612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 11651244 - 11651177
Alignment:
Q  82 cctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    |||| ||||||| |||||| ||||  ||||||||||||||||||||||| |||| |||||||||||||    
T  11651244 cctaagaagcacggatacggacataagacacgatacggacactgacacgtcgacacagctaataattt 11651177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 28084475 - 28084537
Alignment:
Q  87 gaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    |||||||||||||| ||| ||||||||| || ||| ||||||||||||| ||||||| |||||    
T  28084475 gaagcacagatacggacaccggacacgacacagacgctgacacgccgacacagctaagaattt 28084537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 15724563 - 15724498
Alignment:
Q  183 gtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagt 248  Q
    |||||||||||||| |||  ||| ||||||||| || |||||| |||||||||||||| |||||||    
T  15724563 gtcggtgtcgtgtcggtgtcggacacaacacgtgtcagacaccaaaacacgcctaatccgaggagt 15724498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 23293072 - 23292986
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcg 192  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||       | | |||||||||| | ||||| |||||||||||||    
T  23293072 cggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcg 23292986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 19312366 - 19312446
Alignment:
Q  164 attcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgag 244  Q
    ||||||||| ||||  ||| |||||||||||||  ||  |||||| |||||| ||||||||||| ||||| ||||||||||    
T  19312366 attcagtgtaattataagtatcggtgtcgtgtcgttgtcggatacgacacgtgtccgacaccgagacacgtctaatctgag 19312446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 16303351 - 16303263
Alignment:
Q  107 ggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgt 195  Q
    |||||||||||||||||||||||||||||  || ||||| |||       | | |||||| ||||| ||||| ||||||||||||||||    
T  16303351 ggacacgatacggacactgacacgccgacaaagataatattttgaaaaaatgatataatttagtgtaattacaagtgtcggtgtcgtgt 16303263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 12047385 - 12047339
Alignment:
Q  217 tccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
    ||||||||| |||||||||||||| |||||| |||||| ||||||||    
T  12047385 tccgacaccaaaacacgcctaatccgaggagcatccatgcttcatag 12047339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 30298929 - 30299008
Alignment:
Q  116 acggacactgacacgccgactcagctaataattt-nnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtg 194  Q
    |||||||||||||||||||| |||||||||||||        | | |||||||||||| ||||| |||||||||||||||    
T  30298929 acggacactgacacgccgacacagctaataatttgaaaaaaatgacataattcagtgtaattacaagtgtcggtgtcgtg 30299008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 30327797 - 30327876
Alignment:
Q  116 acggacactgacacgccgactcagctaataattt-nnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtg 194  Q
    |||||||||||||||||||| |||||||||||||        | | |||||||||||| ||||| |||||||||||||||    
T  30327797 acggacactgacacgccgacacagctaataatttgaaaaaaatgacataattcagtgtaattacaagtgtcggtgtcgtg 30327876  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 40481588 - 40481653
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||| |||| ||||||||| ||||||||| || ||||||||||||||||  || ||||||||||    
T  40481588 ctatgaatcacaaatacgaaca-cggacacgacactgacactgacacgccgatacaactaataattt 40481653  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 20633460 - 20633501
Alignment:
Q  108 gacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||||||||||||||||| |||| | |||||||||||    
T  20633460 gacacgatacggacactgacacgtcgacaccgctaataattt 20633501  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 27706208 - 27706123
Alignment:
Q  161 ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgagga 246  Q
    |||||| ||||| ||||| |||||  ||||||||| | ||  ||| || |||||||||||| ||||  ||||||||||||||||||    
T  27706208 ataatttagtgtaattacaagtgtgagtgtcgtgttaatgtcggacacgacacgtatccgataccgggacacgcctaatctgagga 27706123  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 261
Target Start/End: Complemental strand, 28000773 - 28000672
Alignment:
Q  161 ataattcagtgtgattaccagtgtcggtgtcgtgtc-agtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttc 259  Q
    |||||||||||| ||||| |||||||||||| |||| |||| ||   || |||||| || |||||||| |||| |||||||||| |||| ||| | ||||    
T  28000773 ataattcagtgtaattacaagtgtcggtgtcatgtcaagtgttgttcacgacacgtgtctgacaccgagacacacctaatctgatgagtgtccgtgcttc 28000674  T
Q  260 at 261  Q
    ||    
T  28000673 at 28000672  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 28964241 - 28964185
Alignment:
Q  210 acacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatagtta 266  Q
    |||| |||||||||| |  |||||||||||| ||||||| ||||| |||||||||||    
T  28964241 acacatatccgacactgggacacgcctaatccgaggagtgtccatgcttcatagtta 28964185  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 34306797 - 34306761
Alignment:
Q  210 acacgtatccgacaccgaaacacgcctaatctgagga 246  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  34306797 acacgtgtccgacaccgagacacgcctaatctgagga 34306761  T

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Target: scaffold0053 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 263
Target Start/End: Original strand, 8771 - 8917
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatgga 205  Q
    ||||||||| |||||||||||||||||||| |||||||||||||       | | || ||| ||||| ||||| ||||||||||||           |||    
T  8771 cggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcatattatttagtgtaattacaagtgtcggtgtc-----------gga 8859  T
Q  206 tacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttcatag 263  Q
     || |||||| ||||||||||| |||||||||||||||||||| ||| | ||||||||    
T  8860 cacgacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcatag 8917  T

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Target: scaffold0306 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 13350 - 13416
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||||| |||||| ||| |||| | || |||||||||||||||||||| || ||||||||||    
T  13350 ctatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataattt 13416  T

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Target: scaffold0152 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 21977 - 21911
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||||| |||||| ||| |||| | || |||||||||||||||||||| || ||||||||||    
T  21977 ctatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataattt 21911  T

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Target: scaffold0136 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 3880 - 3778
Alignment:
Q  161 ataattcagtgtgattaccagtgtcggtgtcgtgtcagtgatggatacaacacgtatccgacaccgaaacacgcctaatctgaggagtatccatacttca 260  Q
    |||||||||||| ||||| |||||| |||||||||  |||  ||| || |||| | ||||||| ||| |||||||||||| ||||||| ||| | |||||    
T  3880 ataattcagtgtaattacaagtgtcagtgtcgtgttggtgtcggacacgacacatgtccgacatcgagacacgcctaatccgaggagtgtccttgcttca 3781  T
Q  261 tag 263  Q
    |||    
T  3780 tag 3778  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 225369 - 225311
Alignment:
Q  91 cacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    |||||| ||| ||| ||||||||| |||||||||||||||||||| ||| |||||||||    
T  225369 cacagacacggacaccggacacgacacggacactgacacgccgacacagataataattt 225311  T

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Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 46651 - 46741
Alignment:
Q  102 acatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtcggtgtcg 192  Q
    ||||||||||||| ||||||| |||||||||||| ||| |||||||||       | | |||||||||||| ||||| | |||||||||||    
T  46651 acatcggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcacataattcagtgtaattacaaatgtcggtgtcg 46741  T

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Target: scaffold0171 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 23371 - 23483
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagt 182  Q
    ||||||||||| |||||| ||| ||||||||| || ||||||||||||||||| ||| |||||| |        | | |||||||||||| ||||  |||    
T  23371 ctatgaagcacggatacggaca-cggacacgacacagacactgacacgccgacacagataataactcaaaaaaatcacataattcagtgtaattataagt 23469  T
Q  183 gtcggtgtcgtgtc 196  Q
    ||||||||||||||    
T  23470 gtcggtgtcgtgtc 23483  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 178905 - 178862
Alignment:
Q  106 cggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||||| |||||||||||||||||||| || ||||||||||    
T  178905 cggacacgacacggacactgacacgccgacacaactaataattt 178862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 192333 - 192292
Alignment:
Q  108 gacacgatacggacactgacacgccgactcagctaataattt 149  Q
    |||||||||||||||||||||||||||| | | |||||||||    
T  192333 gacacgatacggacactgacacgccgacaccgttaataattt 192292  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 92787 - 92859
Alignment:
Q  113 gatacggacactgacacgccgactcagctaataatttnnnnnnnttagataattcagtgtgattaccagtgtc 185  Q
    ||||||||||||||||||||||| | |||||||||||       ||| |||||||||||| ||||| ||||||    
T  92787 gatacggacactgacacgccgacaccgctaataatttgagaaaattacataattcagtgtaattacaagtgtc 92859  T

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Target: scaffold0246 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 19527 - 19592
Alignment:
Q  83 ctatgaagcacagatacgaacatcggacacgatacggacactgacacgccgactcagctaataattt 149  Q
    ||||||| |||| ||||||||| ||||||||| || ||||||||||||||||  || ||||||||||    
T  19527 ctatgaatcacaaatacgaaca-cggacacgacactgacactgacacgccgatacaactaataattt 19592  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 51794 - 51827
Alignment:
Q  116 acggacactgacacgccgactcagctaataattt 149  Q
    |||||||||||||||||||| |||||||||||||    
T  51794 acggacactgacacgccgacacagctaataattt 51827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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