View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11490_high_8 (Length: 323)
Name: NF11490_high_8
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11490_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 20387683 - 20387984
Alignment:
| Q |
9 |
agcataggctttttgattatacccgttgactttacatgtgcattattgccttttgatatataccataagcatttataaactatttaagtcatatagcaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20387683 |
agcataggctttttgattatacccgttgactttacatgtgtattattgccttttgatatataccataagcatttataaactatttaagtcatatagcaat |
20387782 |
T |
|
| Q |
109 |
agtttgcatatggttcgtacacagcaaagcaataattagtcacagaataaaacaacaatttataatctattttgcatgatgaatgttcttgtccatatta |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
20387783 |
agtttgcatatggatcgtacacagcaaagcaataattagtcacagaataaaacaacaatttataaactattttgcatgatcaatgttcttgtccatatta |
20387882 |
T |
|
| Q |
209 |
cagtaacaagtgttctaaagttaccaatcaacgaacataatttcaataataataaaaaatgtcttagttaacgcgtgtgactaaccacttgtaccatttt |
308 |
Q |
| |
|
|| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
20387883 |
caataataagtgtttcaaagttaccaatcaacgaacataatttcaataataataaaaaatgtcttagttaacgtgtgtgactaaccacttgtaacatttt |
20387982 |
T |
|
| Q |
309 |
tg |
310 |
Q |
| |
|
|| |
|
|
| T |
20387983 |
tg |
20387984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University