View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11490_high_9 (Length: 311)
Name: NF11490_high_9
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11490_high_9 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 27440998 - 27440700
Alignment:
| Q |
13 |
cataggtcatagttatcattaaaaataatttgaaataaaataatcaactgcacctgggctacactcttctttctagcctcagcaattttgcgcagaatca |
112 |
Q |
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| T |
27440998 |
cataggtcatagttatcattaaaaataatttgaaataaaataatcaactgcacctgggctacactcttctttctagcctcagcaattttgcgcagaatca |
27440899 |
T |
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| Q |
113 |
aattctccatcactgcaggcgaaccccaacttagtttgtagcctcctagtggtgaccatgcactcacatggattcctttctgcttgcagaattctctaag |
212 |
Q |
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| T |
27440898 |
aattctccatcactgcaggcgaaccccaacttagtttgtagcctcctagtggtgaccatgcactcacatggattcctttctgcttgcagaattctctaag |
27440799 |
T |
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| Q |
213 |
tttcccctgatgccatgatgagttcatttccacctaaatccaaataaaaatttgtatgatgctcgttgtgtctataagtagtaagatatatcatatcta |
311 |
Q |
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| T |
27440798 |
tttcccctgatgccatgatgagttcatttccacctaaatccaaatatgaatttgtatgatgctcgttgtgtctataagtagtaagatatatcatatcta |
27440700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 28 - 255
Target Start/End: Complemental strand, 27443801 - 27443574
Alignment:
| Q |
28 |
tcattaaaaataatttgaaataaaataatcaactgcacctgggctacactcttctttctagcctcagcaattttgcgcagaatcaaattctccatcactg |
127 |
Q |
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| T |
27443801 |
tcattgaaaatagtttgaaataaaataatgagctgcacctgggctacacttttctttctagcctcagcaatttctcgcagaattgaattctccatcactg |
27443702 |
T |
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| Q |
128 |
caggcgaaccccaacttagtttgtagcctcctagtggtgaccatgcactcacatggattcctttctgcttgcagaattctctaagtttcccctgatgcca |
227 |
Q |
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| T |
27443701 |
caggcgaaccaaaacttagtttgtatcctcctagtggtgaccatgcactcacatgaattcctttctgcttgcagaattctctgagtttcccctgatgcca |
27443602 |
T |
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| Q |
228 |
tgatgagttcatttccacctaaatccaa |
255 |
Q |
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| T |
27443601 |
tgatgagttcatttccacctaaatccaa |
27443574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 44 - 268
Target Start/End: Complemental strand, 27429518 - 27429294
Alignment:
| Q |
44 |
gaaataaaataatcaactgcacctgggctacactcttctttctagcctcagcaattttgcgcagaatcaaattctccatcactgcaggcgaaccccaact |
143 |
Q |
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| T |
27429518 |
gaaataaaataatgagctgcacctgggctacactcttctttctagcctctgcaatttcgtgcagaattggattctccatcactgtaggcgaaccccaact |
27429419 |
T |
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| Q |
144 |
tagtttgtagcctcctagtggtgaccatgcactcacatggattcctttctgcttgcagaattctctaagtttcccctgatgccatgatgagttcatttcc |
243 |
Q |
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| T |
27429418 |
tagtttgtatcctcctagtggtgaccatgcactcacatggattcctttctgcttgcagaattctcttagtttcccctgttgccatgatgggttcatctcc |
27429319 |
T |
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| Q |
244 |
acctaaatccaaataaaaatttgta |
268 |
Q |
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| T |
27429318 |
acctaaatccaaacaaaaatttgta |
27429294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 26911095 - 26911221
Alignment:
| Q |
133 |
gaaccccaacttagtttgtagcctcctagtggtgaccatgcactcacatggattcctttctgcttgcagaattctctaagtttcccctgatgccatgatg |
232 |
Q |
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||||||||| || |||||| |||| | |||||||||||||| |||||| |||||||||| | |||||||||| || ||||| | |||||||| |||| |
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| T |
26911095 |
gaaccccaaaatactttgtatgctcccaatggtgaccatgcacacacatgaattcctttcttcatgcagaattccctgagtttttcttgatgccaagatg |
26911194 |
T |
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| Q |
233 |
agttcatttccacctaaatccaaataa |
259 |
Q |
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| T |
26911195 |
gattcatttctacctaaatccaaataa |
26911221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 26911054 - 26911093
Alignment:
| Q |
60 |
ctgcacctgggctacactcttctttctagcctcagcaatt |
99 |
Q |
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| T |
26911054 |
ctgcacctgagctacactcttatttctagcctcagcaatt |
26911093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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