View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11490_low_1 (Length: 707)
Name: NF11490_low_1
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11490_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 4 - 685
Target Start/End: Complemental strand, 48230713 - 48230008
Alignment:
| Q |
4 |
gtagaagaaagttgaccaaatacacatgcagtatggccttgatgaagtaattaactgctagggccttaggtagcatgcggagagctaagaagaatcaatt |
103 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48230713 |
gtagaagaaagttgaccaaatacacattcagtatggccttgatgaagtgattaactgctagggccttaggtagcatgcggagagctaagaagaatcaatt |
48230614 |
T |
|
| Q |
104 |
atatatatacaggaacatagacaatctaaaaaagcacatacctgtgaaataaatgaatgagatttgaatcatatgaagcattattgccttaa---agtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48230613 |
atatatatacaggaacatagacaatctaaaaaagcacatacctgtgaaataaatgaatgagatttgaatcatatgaagcattattgccttaaagtagtaa |
48230514 |
T |
|
| Q |
201 |
tgaagtcacaagttgaaatctagggttagtccaaccattaaaaagtggaaaacgataaaaagaactaattttc---------------ttttgaatctcg |
285 |
Q |
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| T |
48230513 |
tgaagtcacaagttgaaatctagggttagtccaaccattaaaaagtggaaaacgataaaaagaactaattttcttttgaaaagttatattttgaatctcg |
48230414 |
T |
|
| Q |
286 |
gtggattgtgcaagtgaaactagtgtcataaactacagagaaataggtatgaaaacataaaacgaacaagagtnnnnnnnnnnnntggtggtggggtgac |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48230413 |
gtggattgtgcaagtgaaactagtgtcataaactacagagaaataggtatgaaaacataaaacgaacaagagtgagagagagagatggtggtggggtgac |
48230314 |
T |
|
| Q |
386 |
agatagagagtaagcacatatagcttcaagcatgaaacatcatcgtgcaagaaaacaccatgtgtgctcactctcttctgtcacc------acccttacc |
479 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48230313 |
agatagagagtaagcacatatagcttcaagcaggaaacataatcgtgcaagaaaacaccatgtgtgctcactctcttctgtcaccacccttacccttacc |
48230214 |
T |
|
| Q |
480 |
cttaattaaccctcatttctggaatgttatgggagataattggtaatgggggagacaacaagttaattagtccttgtttcctctatatgtaacaaaggag |
579 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48230213 |
cttaattaaccctcatttctggaatgttatgggagataattggtaatgggggagacaacaagttaattagtccttgtttcctctatatgtaacaaaggag |
48230114 |
T |
|
| Q |
580 |
aactttgagatgtgtgaagagatgaagggtgtggaagggtttatatagagcccaaaaagaatttgcttgcattatctaatgtaaggaataaatgtgggtt |
679 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48230113 |
aactttgagatgtgtgaagagatgaagggtgtggaagggtttatatagagcccaaaaagaatttgcttgcattatctaatgtaaggaataaatgtgggtt |
48230014 |
T |
|
| Q |
680 |
tatctt |
685 |
Q |
| |
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|||||| |
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|
| T |
48230013 |
tatctt |
48230008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 371 - 478
Target Start/End: Original strand, 4043016 - 4043120
Alignment:
| Q |
371 |
tggtggtggggtgacagatagagagtaagcacatatagcttcaagcatgaaacatcatcgtgcaagaaaacaccatgtgtgctcactctcttctgtcacc |
470 |
Q |
| |
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||||| |||||||||||||||||||| |||||| |||||||| || |||||||||||| || |||| ||||||||||||||||||||||||||||| |
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| T |
4043016 |
tggtgatggggtgacagatagagagtgagcacacatagcttcgagaatgaaacatcata---cacgaaagtaccatgtgtgctcactctcttctgtcacc |
4043112 |
T |
|
| Q |
471 |
acccttac |
478 |
Q |
| |
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||||||| |
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|
| T |
4043113 |
tcccttac |
4043120 |
T |
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