View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11490_low_12 (Length: 303)
Name: NF11490_low_12
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11490_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 4409155 - 4409280
Alignment:
| Q |
14 |
cagagagagagtgaaatatagcagtgattcagataaatgatcagagagagagtgaaaagatgggccctctaaagcctgaaacagaaatgagtggcactgc |
113 |
Q |
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| T |
4409155 |
cagagagagagtgaaatatagcagtgattcagataaatgatcagagagagagtgaaaagatgggccctctaaagcctgaaacagaaatgagtggcactgc |
4409254 |
T |
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| Q |
114 |
accaaacactatacactgtatcaatg |
139 |
Q |
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| T |
4409255 |
accaaacactatacactgtatcaatg |
4409280 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 4409349 - 4409388
Alignment:
| Q |
208 |
atctttgcatttacatacataggtgcataaactagccccc |
247 |
Q |
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| T |
4409349 |
atctttgcatttacatacataggtgcataaactagccccc |
4409388 |
T |
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