View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11490_low_13 (Length: 303)
Name: NF11490_low_13
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11490_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 47461229 - 47461465
Alignment:
| Q |
18 |
ttaatgtggtctcttgatttaaacatgtgtcacttccatcctttaattttactatgttaatccataatagtcattttcgtcacatacggataaaatagcg |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47461229 |
ttaatgtggtctcttgatttaaaaatgtgtcacttccatcctttaattttactatgttaatccataatagtcattttcgtcacatacgggtaaaatagcg |
47461328 |
T |
|
| Q |
118 |
gttgacttgattgatactttgatatttatatgaattagacggtagtgaaatatatttgacatttgaaattgttttcaccctaaactagttgttggaatac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47461329 |
gttgacttgattgatactttgatatttatttgaa-tagacggtagtgaaagatatttgacatttgaaattgttttcaccctaaactagttgttggaatac |
47461427 |
T |
|
| Q |
218 |
attcatcgggaaaaccctaaactagttgtcttctccaa |
255 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
47461428 |
attcattgggaaaaccctaaactagttgtcttccccaa |
47461465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 47461550 - 47461583
Alignment:
| Q |
263 |
ttgaaagatgctaattggattggtttctctgctt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
47461550 |
ttgaaagatgctaattggattggtttctctgctt |
47461583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University