View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11490_low_2 (Length: 681)
Name: NF11490_low_2
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11490_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 24 - 653
Target Start/End: Original strand, 45292596 - 45293228
Alignment:
| Q |
24 |
attatgtgcagtgttcgtagggtgtaccgtcaaatttagtatcctcttaaataacaacaatagtagcaaacatcactacttcgatgcaaaggattaggaa |
123 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45292596 |
attatgtgcagtgttcgtagggtgcaccatcaaatttagtatactcttaaataacaacaatagtagcaaacatcactacttcgatgcaaaggattaggaa |
45292695 |
T |
|
| Q |
124 |
gttaaattttacattgcaataaagtactcggtacattgatgtnnnnnnnnnnnngttcacaccattcagagtatttgtattttgcggtgggggacaccat |
223 |
Q |
| |
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|||||||||||||||||||||| |||||| | ||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
45292696 |
gttaaattttacattgcaataa-gtactcactgcattgatgtaaaaataaaaa-gttcacaccattcagagtatttgtgttttgcggtgggggccaccat |
45292793 |
T |
|
| Q |
224 |
agttttaaggactatattaaa---------catggaaaaattaaacatggtcgctaacaatcccaacacgttgaaggaggatgacagaaaaatgtcaatt |
314 |
Q |
| |
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|||||||||||||||| || | |||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45292794 |
agttttaaggactatactacatcttcatcgcatggaaatattaaacatggtcgctaaaaatcccaacacgttgaaggaggacgacagaaaaatgtcaatt |
45292893 |
T |
|
| Q |
315 |
tccctctttgatgggaactgaaaatctctctaaaacttatgtagcataaagggagctcaactccttactagagaggaacacgaatttaatggcaacaagc |
414 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45292894 |
tcgctctttgatgggaactgaaaatctctctaaaacttatgtagcataaagggggctcaactccttactagggaggaacacgaatttaatggcaacaagc |
45292993 |
T |
|
| Q |
415 |
aatctccacccaagccaatga---cccacccacttcaccaaaactctcctctcttcccttaccaaaaccccctgcacccttcccatgaccatccaatttt |
511 |
Q |
| |
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||||| ||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45292994 |
aatcttcacccaagccaatgatgacccacctacttcaccaaaactctcctctcttcctttaccaaaaccccctgcacccttcccattaccatccaatttt |
45293093 |
T |
|
| Q |
512 |
ttccctaccaggacccttcaattacattgaaagctgtctctaccgttgttccaagtgtgttccagaaaatattctctcatatatcttccttccccaatcc |
611 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45293094 |
ttccctaccaggacccttcaattacattgaaagctgtctctaccgttgttccaagtgtgttccagaaaatattctctcatatatcttcct-------tcc |
45293186 |
T |
|
| Q |
612 |
ccacagtcctactccattccataattctgctagcagaaacct |
653 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45293187 |
ccacagtcctactccattccataattctgctagcaaaaacct |
45293228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 406 - 607
Target Start/End: Complemental strand, 28329487 - 28329278
Alignment:
| Q |
406 |
gcaacaagcaatctccacccaagccaatgacccacccacttcacca--aaactctc-----ctctcttcccttaccaaaaccccctgcacccttcccatg |
498 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || |||||| |||||||| ||||||||||| ||| ||||||| ||||||||||||||| |
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| T |
28329487 |
gcaacaagcaatctccacccaagccaatggcccaccaacatcaccacaaaactctcttccactctcttccct-accgaaacccc-tgcacccttcccatg |
28329390 |
T |
|
| Q |
499 |
accatccaattttttccctaccaggacccttcaatt---acattgaaagctgtctctaccgttgttccaagtgtgttccagaaaatattctctcatatat |
595 |
Q |
| |
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| ||||||| |||||||||| ||||||| | ||| |||||||||||||||| |||||||||||| || | ||||||||||||||||||||||| |
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| T |
28329389 |
aacatccaaccttttccctactaggacccctttatttacacattgaaagctgtctataccgttgttcccagcacgcgccagaaaatattctctcatatat |
28329290 |
T |
|
| Q |
596 |
cttccttcccca |
607 |
Q |
| |
|
|||||||||||| |
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|
| T |
28329289 |
cttccttcccca |
28329278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 406 - 607
Target Start/End: Complemental strand, 44780964 - 44780765
Alignment:
| Q |
406 |
gcaacaagcaatctccacccaagccaatgacccacccacttcaccaaaactctcctctcttcccttaccaaaaccccctgcacccttcccatgaccatcc |
505 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || |||||| || ||| |||||||| || ||||||| |||||||||||||||| ||||| |
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| T |
44780964 |
gcaacaagcaatctccacccaagccaatggcccaccaacatcaccacaaaactc---tcttccct-actgaaacccc-tgcacccttcccatgaacatcc |
44780870 |
T |
|
| Q |
506 |
aattttttccctaccagga-cccttcaatt--acattgaaagctgtctctaccgttgttccaagtgtgttccagaaaatattctctcatatatcttcctt |
602 |
Q |
| |
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|| ||||||||||| |||| ||||| | || |||||||||||||||| |||||||||||| || | |||||||||||||||||||||||||||||| |
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| T |
44780869 |
aactttttccctactaggacccctttacttacacattgaaagctgtctataccgttgttcccagcacgcgccagaaaatattctctcatatatcttcctt |
44780770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 318 - 409
Target Start/End: Complemental strand, 28329609 - 28329518
Alignment:
| Q |
318 |
ctctttgatgggaactgaaaatctctctaaaacttatgtagcataaagggagctcaactccttactagagaggaacacgaatttaatggcaa |
409 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| ||||| |||| |||||||||||||||||||| | ||| |||||| ||||||||||||| |
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| T |
28329609 |
ctctttgatgggaactaaaaatctctcgaaaagttatgcagcaaaaagggagctcaactccttataacagaagaacacaaatttaatggcaa |
28329518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 318 - 409
Target Start/End: Complemental strand, 44781086 - 44780995
Alignment:
| Q |
318 |
ctctttgatgggaactgaaaatctctctaaaacttatgtagcataaagggagctcaactccttactagagaggaacacgaatttaatggcaa |
409 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| ||||| |||| |||||||||||||||||||| | |||||||||| |||||||||||| |
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| T |
44781086 |
ctctttgatgggaactaaaaatctctcgaaaagttatgcagcaaaaagggagctcaactccttataacagaggaacacagatttaatggcaa |
44780995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 28329823 - 28329749
Alignment:
| Q |
71 |
taaataacaacaatagtagcaaacatcactacttcgatgcaaaggattaggaagttaaattttacattgcaataa |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| || ||||| ||||| ||| ||||||||||||||| |
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| T |
28329823 |
taaataacaacaatagtagcaaacatcactactttgatgaaagggattgggaagataatatttacattgcaataa |
28329749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 44781301 - 44781227
Alignment:
| Q |
71 |
taaataacaacaatagtagcaaacatcactacttcgatgcaaaggattaggaagttaaattttacattgcaataa |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| || ||||| ||||| ||| ||||||||||||||| |
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|
| T |
44781301 |
taaataacaacaatagtagcaaacatcactactttgatgtaagggattgggaagataatatttacattgcaataa |
44781227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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