View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11490_low_20 (Length: 249)
Name: NF11490_low_20
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11490_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 14610027 - 14609793
Alignment:
| Q |
1 |
cagccatggcctcgaatgttaaaagagcacctccatcatctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14610027 |
cagccatggcctcgaatgttaaaagagcacctccatcatctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggt |
14609928 |
T |
|
| Q |
101 |
attggcagttacaagaggcggctctttatcaggatcagccgtcgacacaaagaggtcacaaccaggcagatcagatcttcctgtgggatttgtcggggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14609927 |
attggcagttacaagaggcggctctttatcaggatcagccgtcgacacaaagaggtcacaaccaggcagatcagatcttgctgtgggatttgtcggggtt |
14609828 |
T |
|
| Q |
201 |
acaacgtggaatttctcatgaaggacgtctaggtc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609827 |
acaacgtggaatttctcatgaaggacgtctaggtc |
14609793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 14598472 - 14598639
Alignment:
| Q |
24 |
agagcacctccatcatctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaagaggcggct |
123 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14598472 |
agagctcctccatcatctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcggct |
14598571 |
T |
|
| Q |
124 |
ctttatcaggatcagccgtcgacacaaagaggtcacaaccaggcagatcagatcttcctgtgggattt |
191 |
Q |
| |
|
| || ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14598572 |
ccttttcaggatcagcagttgacacaaagaggtcacaaccaggcagatcagatctccctgtgggattt |
14598639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 29919058 - 29919210
Alignment:
| Q |
1 |
cagccatggcctcgaatgttaaaagagcacctccatcatctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggt |
100 |
Q |
| |
|
||||||| ||||| || |||||||| ||||| |||||||| |||||||| |||| |||||||| |||||||| ||| | ||||| || || | ||||| |
|
|
| T |
29919058 |
cagccattgcctcaaaagttaaaagtgcacccccatcatcagaaacatagcaagaaagcttctcaactggatagtcagcagctaaaatcgacaagatggt |
29919157 |
T |
|
| Q |
101 |
attggcagttacaagaggcggctctttatcaggatcagccgtcgacacaaaga |
153 |
Q |
| |
|
|| || || ||||| || || ||||| ||||||||||| || || ||||||| |
|
|
| T |
29919158 |
gtttgctgtgacaagtggtggttctttctcaggatcagcagttgaaacaaaga |
29919210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 44633051 - 44632913
Alignment:
| Q |
15 |
aatgttaaaagagcacctccatcatctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaa |
114 |
Q |
| |
|
||||| |||||||| || |||||||| || | ||||||||| | || ||||| |||||||||||||| | || || | |||||| || |||||||||| |
|
|
| T |
44633051 |
aatgtcaaaagagctccaccatcatcagacaaataacaagcaactttttccacaggataatcaactgcaaggatagataaaatggtgtttgcagttacaa |
44632952 |
T |
|
| Q |
115 |
gaggcggctctttatcaggatcagccgtcgacacaaaga |
153 |
Q |
| |
|
|||| |||||||| || ||||| || || || ||||||| |
|
|
| T |
44632951 |
gaggtggctctttttctggatctgcagttgaaacaaaga |
44632913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 47918177 - 47918105
Alignment:
| Q |
1 |
cagccatggcctcgaatgttaaaagagcacctccatcatctgaaacataacaagcgagcttctccactggata |
73 |
Q |
| |
|
||||||| |||| || |||||||| |||||||||||||| |||||||| |||| |||||||| |||||||| |
|
|
| T |
47918177 |
cagccattgccttaaaagttaaaagtgcacctccatcatcagaaacatagcaagaaagcttctcaactggata |
47918105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 12194759 - 12194907
Alignment:
| Q |
3 |
gccatggcctcgaatgttaaaagagcacctccatcatctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtat |
102 |
Q |
| |
|
||||||||||| || |||| ||| | ||| || || || || |||||||| ||||| || || || || ||||||||||||| || ||||||||||||| |
|
|
| T |
12194759 |
gccatggcctcaaaagttagaagtgaaccgccgtcgtcagagacataacatgcgagtttatcaacagggtaatcaactgctagaattgaaagaatggtat |
12194858 |
T |
|
| Q |
103 |
tggcagttacaagaggcggctctttatcaggatcagccgtcgacacaaa |
151 |
Q |
| |
|
| || || ||||| || |||||||| || ||||| || || |||||||| |
|
|
| T |
12194859 |
ttgcggtaacaaggggtggctctttttctggatcggcagttgacacaaa |
12194907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University