View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11490_low_22 (Length: 240)
Name: NF11490_low_22
Description: NF11490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11490_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14610127 - 14610349
Alignment:
| Q |
1 |
ctaagaacaagagcagattagattttgtgaaggatagaagaagggtgaagagggagtatgatgagttcaaggtgcgtataaatggccttccggagtcaat |
100 |
Q |
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| T |
14610127 |
ctaagaacaagagcagattagattttgtgaaggatagaagaagggtgaagagggagtatgatgagttcaaggtgcgtataaatggccttccggagtcaat |
14610226 |
T |
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| Q |
101 |
taggagaagatctgatgcatttaacgcaagggaggaaatgaagaagatgaagcaattcaaggagagtggggctgatccttctaagcctatcaaggtaata |
200 |
Q |
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| T |
14610227 |
taggagaagatctgatgcatttaacgcaagggaggaaatgaagaagatgaagcaattcaaggagagtggggctgatccttctaagcctatcaaggtaata |
14610326 |
T |
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| Q |
201 |
aaggctacctggatggctgatgg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
14610327 |
aaggctacctggatggctgatgg |
14610349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 14598347 - 14598127
Alignment:
| Q |
3 |
aagaacaagagcagattagattttgtgaaggatagaagaagggtgaagagggagtatgatgagttcaaggtgcgtataaatggccttccggagtcaatta |
102 |
Q |
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| T |
14598347 |
aagaacaagagtaaactggatttcgtgaaggacagaagaagggtgaaaagggagtacgatgagttcaaagtgcgcataaatggccttcctgattctatta |
14598248 |
T |
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| Q |
103 |
ggagaagatctgatgcatttaacgcaagggaggaaatgaagaagatgaagcaattcaaggagagtggggctgatccttctaagcctatcaaggtaataaa |
202 |
Q |
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| T |
14598247 |
ggagaagatctgatgcatttaatgcaagagaggaaatgaagatgatgaagcatttgaaggagactggggctgaccctttggagcctgttaaagtattgaa |
14598148 |
T |
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| Q |
203 |
ggctacctggatggctgatgg |
223 |
Q |
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||| || |||||||||||||| |
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| T |
14598147 |
ggccacttggatggctgatgg |
14598127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 29918938 - 29918886
Alignment:
| Q |
21 |
gattttgtgaaggatagaagaagggtgaagagggagtatgatgagttcaaggt |
73 |
Q |
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| T |
29918938 |
gattttgtgaaggatcgtagaaggctgaagcgtgagtatgatgagttcaaggt |
29918886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 47918295 - 47918349
Alignment:
| Q |
19 |
tagattttgtgaaggatagaagaagggtgaagagggagtatgatgagttcaaggt |
73 |
Q |
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| T |
47918295 |
tagattttgtgaaggatcgtagaaggctgaagcgtgagtatgatgagtttaaggt |
47918349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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